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manuleramanulera
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migrate examples
1 parent 33cf5e6 commit 51cb847

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+41
-77
lines changed

‎src/data/examples/cloning_strategy_with_files.json‎

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]
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}
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],
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

‎src/data/examples/cloning_strategy_with_sequencing.json‎

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]
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}
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],
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

‎src/data/examples/collection_example.json‎

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"database_id": null,
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"input": [],
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"repository_id": "39295",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/49547/50886467-8250-49c3-8987-07dbd5627b8e/addgene-plasmid-39295-sequence-49547.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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"database_id": null,
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"input": [],
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"repository_id": "39282",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/240599/4936a6ae-6b4d-4d24-b7ac-2339fad5755d/addgene-plasmid-39282-sequence-240599.gbk",
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"addgene_sequence_type": "addgene-full"
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},
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"database_id": null,
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"input": [],
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"repository_id": "39295",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/49547/50886467-8250-49c3-8987-07dbd5627b8e/addgene-plasmid-39295-sequence-49547.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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"database_id": null,
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"input": [],
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"repository_id": "39282",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/240599/4936a6ae-6b4d-4d24-b7ac-2339fad5755d/addgene-plasmid-39282-sequence-240599.gbk",
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"addgene_sequence_type": "addgene-full"
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},
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"primers": [],
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"description": "A dummy example",
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"files": null,
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

‎src/data/examples/crispr_hdr.json‎

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"output_name": null,
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"database_id": null,
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"input": [],
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"repository_id": "NC_003424.3",
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"coordinates": "1877009..1881726",
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"assembly_accession": "GCF_000002945.1",
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"sequence_accession": "NC_003424.3",
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"locus_tag": "SPAPB1A10.09",
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"gene_id": 2543372,
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"start": 1877009,
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"end": 1881726,
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"strand": 1
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"gene_id": 2543372
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},
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{
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"id": 2,
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"database_id": null,
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"input": [],
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"repository_id": "39295",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/49547/50886467-8250-49c3-8987-07dbd5627b8e/addgene-plasmid-39295-sequence-49547.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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],
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"description": "Replacing a fragment in the ase1 ORF by a 3xHA tag, using CRISPR-HDR",
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"files": null,
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

‎src/data/examples/extract_subsequence_from_file.json‎

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"primers": [],
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"description": "",
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"files": null,
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

‎src/data/examples/gateway.json‎

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"output_name": null,
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"database_id": null,
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"input": [],
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"repository_id": "NC_000913.3",
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"coordinates": "complement(362231..367305)",
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"assembly_accession": "GCF_000005845.2",
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"sequence_accession": "NC_000913.3",
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"locus_tag": "b0344",
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"gene_id": 945006,
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"start": 362231,
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"end": 367305,
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"strand": -1
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"gene_id": 945006
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},
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{
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"id": 2,
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"type": "SnapGenePlasmidSource",
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"output_name": "pDONR221",
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"database_id": null,
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"input": [],
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"repository_id": "gateway_cloning_vectors/pDONR221",
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"repository_name": "snapgene"
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"repository_id": "gateway_cloning_vectors/pDONR221"
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},
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{
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"id": 3,
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"type": "SnapGenePlasmidSource",
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"output_name": "pcDNA6.2_C-YFP-DEST",
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"database_id": null,
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"input": [],
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"repository_id": "gateway_cloning_vectors/pcDNA6.2_C-YFP-DEST",
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"repository_name": "snapgene"
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"repository_id": "gateway_cloning_vectors/pcDNA6.2_C-YFP-DEST"
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},
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{
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"id": 4,
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],
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"description": "Cloning the lacZ gene from E. coli into an entry clone, then expression clone",
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"files": null,
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

‎src/data/examples/gateway_start.json‎

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"output_name": null,
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"database_id": null,
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"input": [],
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"repository_id": "CU329670.1",
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"coordinates": "1877189..1881726",
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"assembly_accession": "GCA_000002945.3",
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"sequence_accession": "CU329670.1",
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"locus_tag": "SPOM_SPAPB1A10.09",
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"gene_id": null,
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"start": 1877189,
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"end": 1881726,
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"strand": 1
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"gene_id": null
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},
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{
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"id": 2,
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"type": "SnapGenePlasmidSource",
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"output_name": "pDONR221",
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"database_id": null,
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"input": [],
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"repository_id": "gateway_cloning_vectors/pDONR221",
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"repository_name": "snapgene"
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"repository_id": "gateway_cloning_vectors/pDONR221"
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},
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{
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"id": 3,
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],
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"description": "Deletion of the ORF of ase1 by homologous recombination in S.pombe",
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"files": null,
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

‎src/data/examples/gibson_assembly.json‎

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"database_id": null,
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"input": [],
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"repository_id": "52691",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v2.0.0/sequences/210876/0ad0ffaa-d9b9-48c4-af54-19e87587070e/addgene-plasmid-52691-sequence-210876.gbk",
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"addgene_sequence_type": "addgene-full"
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},
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"output_name": null,
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"database_id": null,
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"input": [],
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"repository_id": "NC_003424.3",
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"coordinates": "1877189..1881726",
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"assembly_accession": "GCF_000002945.2",
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"sequence_accession": "NC_003424.3",
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"locus_tag": "SPOM_SPAPB1A10.09",
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"gene_id": 2543372,
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"start": 1877189,
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"end": 1881726,
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"strand": 1
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"gene_id": 2543372
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},
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{
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"id": 3,
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],
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"description": "Cloning the ase1 gene from S. pombe's genome into pREP42-MCS+ expression vector using Gibson assembly.",
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"files": null,
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

‎src/data/examples/golden_gate.json‎

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"database_id": null,
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"input": [],
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"repository_id": "65109",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/110162/c1c98803-c8ba-44a6-95b8-d6a94097e36f/addgene-plasmid-65109-sequence-110162.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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"database_id": null,
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"input": [],
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"repository_id": "65116",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/110169/9ee8c8ed-5a57-43f9-99dd-79e66631ad89/addgene-plasmid-65116-sequence-110169.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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"database_id": null,
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"input": [],
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"repository_id": "65145",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/110198/117464a2-bab4-4fd2-8157-4ac89cf7ab6d/addgene-plasmid-65145-sequence-110198.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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"database_id": null,
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"input": [],
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"repository_id": "65158",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/110211/a0b9a8c0-9498-4100-8260-5346cffa1979/addgene-plasmid-65158-sequence-110211.gbk",
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"addgene_sequence_type": "depositor-full"
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"database_id": null,
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"input": [],
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"repository_id": "65174",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/193065/ddf46d89-9718-435c-b5bb-3002a17065ab/addgene-plasmid-65174-sequence-193065.gbk",
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"addgene_sequence_type": "addgene-full"
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},
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"database_id": null,
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"input": [],
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"repository_id": "65181",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/110234/113eb058-6e21-40b5-be0b-2e9c986e72bb/addgene-plasmid-65181-sequence-110234.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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"database_id": null,
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"input": [],
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"repository_id": "65188",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/110241/a6c1b84f-64cb-4675-9318-7aa00279074f/addgene-plasmid-65188-sequence-110241.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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"database_id": null,
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"input": [],
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"repository_id": "65190",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v1.7.9-0-g88a3305/sequences/110243/32100717-608c-4d8d-8cc1-800ede3d637b/addgene-plasmid-65190-sequence-110243.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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"output_name": null,
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"database_id": null,
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"input": [],
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"repository_id": "CU329670.1",
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"coordinates": "3437890..3443117",
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"assembly_accession": "GCA_000002945.3",
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"sequence_accession": "CU329670.1",
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"locus_tag": "SPOM_SPAC3A11.14C",
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"gene_id": null,
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"start": 3437890,
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"gene_id": null
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},
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{
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"id": 10,
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],
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"description": "Cloning of CDS of S. pombe gene pkl1 with an N-term Venus tag using MoClo kit from John Dueber, see:\n\nhttps://www.addgene.org/kits/moclo-ytk/#kit-contents\n\nThe plasmids used are:\n\npYTK002 - ConLS\npYTK009 - pTDH3\npYTK038 - Venus 65145\npayload - CDS of pkl1 from S. pombe\npYTK051 - tENO1 65158\npYTK067 - ConR1 65174\npYTK074 - URA3 65181\npYTK081 - CEN6/ARS4 65188\npYTK083 - AmpR-ColE1 65190\n\n\n\n\n",
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"files": null,
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

‎src/data/examples/homologous_recombination.json‎

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"database_id": null,
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"input": [],
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"repository_id": "19342",
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"repository_name": "addgene",
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"sequence_file_url": "https://media.addgene.org/snapgene-media/v2.0.0/sequences/8997/a6b027f8-013a-4b68-bf7e-359f34a653d0/addgene-plasmid-19342-sequence-8997.gbk",
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"addgene_sequence_type": "depositor-full"
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},
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"output_name": null,
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"database_id": null,
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"input": [],
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"repository_id": "CU329670.1",
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"coordinates": "1877189..1881726",
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"assembly_accession": "GCA_000002945.3",
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"sequence_accession": "CU329670.1",
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"locus_tag": "SPOM_SPAPB1A10.09",
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"gene_id": null,
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"start": 1877189,
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"gene_id": null
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},
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{
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"id": 4,
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],
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"description": "Deletion of the ORF of ase1 by homologous recombination in S.pombe",
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"files": null,
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"schema_version": "0.4.3",
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"schema_version": "0.4.9",
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"backend_version": null,
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"frontend_version": null
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}

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