Update for new docker image with G4 11.4.0

Author: tbaudier

.github/workflows/Dockerfile_gatebenchmarks

@@ -5,7 +5,7 @@
 #push: docker push tbaudier/gatebenchmarks
 #interactive: docker run -ti --rm -v $(Pipeline.Workspace)/software:/home tbaudier/gatebenchmarks /bin/bash
 
-FROM rockylinux:8
+FROM rockylinux/rockylinux:10
 RUN yum install -y  make \
                     libX11-devel.x86_64 \
                     libXpm-devel.x86_64 \
@@ -14,7 +14,7 @@ RUN yum install -y  make \
                     libXmu-devel.x86_64 \
                     libxml2-devel.x86_64 \
                     binutils \
-                    qt5-qtbase-devel.x86_64 \
+                    qt6-qtbase-devel \
                     git \
                     cmake \
                     unzip \
@@ -25,23 +25,24 @@ RUN yum install -y  make \
                     which \
                     openssl-devel \
                     patch \
+                    expat-devel \
                     findutils \
                     procps \
                     libjpeg-devel
 
 #create folder and install cmake
 RUN mkdir software \
  && cd software \
- && wget https://github.com/Kitware/CMake/releases/download/v3.18.4/cmake-3.18.4-Linux-x86_64.tar.gz \
- && tar xzvf cmake-3.18.4-Linux-x86_64.tar.gz \
- && echo "export PATH=/software/cmake-3.18.4-Linux-x86_64/bin/:$PATH" >> /etc/mybashrc
+ && wget https://github.com/Kitware/CMake/releases/download/v3.31.11/cmake-3.31.11-Linux-x86_64.tar.gz \
+ && tar xzvf cmake-3.31.11-Linux-x86_64.tar.gz \
+ && echo "export PATH=/software/cmake-3.31.11-Linux-x86_64/bin/:$PATH" >> /etc/mybashrc
 
 #Build root
 RUN mkdir software/root-cern \
  && source /etc/mybashrc \
  && cd software/root-cern \
  && mkdir src bin install \
- && git clone --branch v6-24-06 https://github.com/root-project/root.git src \
+ && git clone --branch v6-36-08 https://github.com/root-project/root.git src \
  && cd bin \
  && cmake ../src/ -DCMAKE_CXX_STANDARD=17 \
                   -Dpython=OFF \
@@ -55,7 +56,7 @@ RUN mkdir software/geant4 \
  && source /etc/mybashrc \
  && cd software/geant4 \
  && mkdir src bin install data \
- && git clone --branch v11.3.0 https://github.com/Geant4/geant4.git src \
+ && git clone --branch v11.4.0 https://github.com/Geant4/geant4.git src \
  && cd bin \
  && cmake ../src/ -DGEANT4_INSTALL_DATA=OFF \
                   -DGEANT4_INSTALL_DATADIR=/software/geant4/data \
@@ -77,26 +78,26 @@ RUN cd software/geant4 \
  && mv G4* data
 
 RUN cd software/geant4 \
- && wget https://cern.ch/geant4-data/datasets/G4EMLOW.8.6.1.tar.gz \
- && tar xzvf G4EMLOW.8.6.1.tar.gz \
+ && wget https://cern.ch/geant4-data/datasets/G4EMLOW.8.8.tar.gz \
+ && tar xzvf G4EMLOW.8.8.tar.gz \
  && rm -f G4*.tar.gz \
  && mv G4* data
 
 RUN cd software/geant4 \
- && wget https://cern.ch/geant4-data/datasets/G4PhotonEvaporation.6.1.tar.gz \
+ && wget https://cern.ch/geant4-data/datasets/G4PhotonEvaporation.6.1.2.tar.gz \
  && wget https://cern.ch/geant4-data/datasets/G4RadioactiveDecay.6.1.2.tar.gz \
  && wget https://cern.ch/geant4-data/datasets/G4RealSurface.2.2.tar.gz \
- && tar xzvf G4PhotonEvaporation.6.1.tar.gz \
+ && tar xzvf G4PhotonEvaporation.6.1.2.tar.gz \
  && tar xzvf G4RadioactiveDecay.6.1.2.tar.gz \
  && tar xzvf G4RealSurface.2.2.tar.gz \
  && rm -f G4*.tar.gz \
  && mv PhotonEvaporation* RadioactiveDecay* RealSurface* data
 
 RUN cd software/geant4 \
- && wget https://cern.ch/geant4-data/datasets/G4PARTICLEXS.4.1.tar.gz \
+ && wget https://cern.ch/geant4-data/datasets/G4PARTICLEXS.4.2.tar.gz \
  && wget https://cern.ch/geant4-data/datasets/G4PII.1.3.tar.gz \
  && wget https://cern.ch/geant4-data/datasets/G4SAIDDATA.2.0.tar.gz \
- && tar xzvf G4PARTICLEXS.4.1.tar.gz \
+ && tar xzvf G4PARTICLEXS.4.2.tar.gz \
  && tar xzvf G4PII.1.3.tar.gz \
  && tar xzvf G4SAIDDATA.2.0.tar.gz \
  && rm -f G4*.tar.gz \
@@ -106,11 +107,11 @@ RUN cd software/geant4 \
  && wget https://cern.ch/geant4-data/datasets/G4ABLA.3.3.tar.gz \
  && wget https://cern.ch/geant4-data/datasets/G4INCL.1.2.tar.gz \
  && wget https://cern.ch/geant4-data/datasets/G4ENSDFSTATE.3.0.tar.gz \
- && wget https://cern.ch/geant4-data/datasets/G4CHANNELING.1.0.tar.gz \
+ && wget https://cern.ch/geant4-data/datasets/G4CHANNELING.2.0.tar.gz \
  && tar xzvf G4ABLA.3.3.tar.gz \
  && tar xzvf G4INCL.1.2.tar.gz \
  && tar xzvf G4ENSDFSTATE.3.0.tar.gz \
- && tar xzvf G4CHANNELING.1.0.tar.gz \
+ && tar xzvf G4CHANNELING.2.0.tar.gz \
  && rm -f G4*.tar.gz \
  && mv G4* data
 

.github/workflows/runTest.sh

@@ -8,17 +8,12 @@ if [ "$TEST" = "t15_optical" ] || [ "$TEST" = "t29_optical_digi" ]; then
 fi
 
 #update python
-yum install -y python39-pip.noarch
-rm /usr/bin/python3 /usr/bin/pip3
-ln -s /bin/python3.9 /usr/bin/python
-ln -s /bin/python3.9 /usr/bin/python3
 python3 -m pip install --upgrade pip
-ln -s /bin/pip3.9 /usr/bin/pip3
 which python3
 python3 --version
 
 #source /etc/mybashrc
-export PATH=/software/cmake-3.18.4-Linux-x86_64/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+export PATH=/software/cmake-3.31.11-Linux-x86_64/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
 source /software/geant4/install/bin/geant4.sh
 source /software/root-cern/install/bin/thisroot.sh
 
@@ -27,7 +22,7 @@ mkdir /software/gatetools
 cd /software
 git clone https://github.com/OpenGATE/GateTools.git gatetools
 cd gatetools
-pip3 install itk==5.3.0
+pip3 install itk==5.4.5
 pip3 install -e .
 pip3 install uproot uproot3 xxhash lz4 pandas
 
@@ -54,7 +49,7 @@ if [ "$compile_torch" = true ] ; then
 fi
 if [ "$TEST" = "t9_gaga_phsp" ] || [ "$TEST" = "t14_phsp_pairs" ]; then
     #install gaga
-    pip3 install torch==1.10.0+cpu torchvision==0.11.1+cpu torchaudio==0.10.0+cpu -f https://download.pytorch.org/whl/cpu/torch_stable.html
+    pip3 install torch==2.2.0+cpu -f https://download.pytorch.org/whl/cpu/torch_stable.html
     cd /software
     mkdir gaga-phsp
     git clone https://github.com/dsarrut/gaga-phsp.git gaga-phsp