set version to v0.8.0

Author: sfchen

README.md

@@ -51,8 +51,9 @@ genefuse -r hg19.fasta -f genes/druggable.hg19.csv -1 genefuse.R1.fq.gz -2 genef
 
 ## Reference genome
 The reference genome should be a single whole FASTA file containg all chromosome data. This file shouldn't be compressed. For human data, typicall `hg19/GRch37` or `hg38/GRch38` assembly is used, which can be downloaded from following sites:
-* `hg19/GRch37`: ftp://ftp.ncbi.nlm.nih.gov/sra/reports/Assembly/GRCh37-HG19_Broad_variant/Homo_sapiens_assembly19.fasta
-* `hg38/GRch38`: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz  Remember to decompress hg38.fa.gz since it is gzipped and is not supported currently.
+* `hg19/GRch37`: https://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz
+* `hg38/GRch38`: https://hgdownload.cse.ucsc.edu/goldenpath/hg38/bigZips/hg38.fa.gz  
+Remember to decompress hg19.fa.gz/hg38.fa.gz since it is gzipped and is not supported currently.
 
 ## Fusion file
 The fusion file is a list of coordinated target genes together with their exons. A sample is:
@@ -82,7 +83,7 @@ Four fusion files are provided with `genefuse`:
 4. `genes/cancer.hg38.csv`: all COSMIC curated fusion genes (http://cancer.sanger.ac.uk/cosmic/fusion) based on `hg38/GRch38` reference assembly.
 
 Notes:
-* `genefuse` runs almost ~5X faster with `druggable` genes than `cancer` genes, since `druggable` genes are only a small subset of `cancer` genes. Use this one if you only care about the fusion related personalized medicine for cancers.
+* `genefuse` runs much faster with `druggable` genes than `cancer` genes, since `druggable` genes are only a small subset of `cancer` genes. Use this one if you only care about the fusion related personalized medicine for cancers.
 * The `cancer` genes should be enough for most cancer related studies, since all COSMIC curated fusion genes are included.
 * If you want to create a custom gene list, please follow the instructions given on next section.
 ### Create a fusion file based on hg19 or hg38

src/common.h

@@ -1,7 +1,7 @@
 #ifndef COMMON_H
 #define COMMON_H
 
-#define FUSIONSCAN_VER "0.7.0"
+#define FUSIONSCAN_VER "0.8.0"
 
 #define _DEBUG true