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Detect and visualize target mutations by scanning FastQ files directly
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* Ultra sensitive.
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* 50X+ faster than normal pipeline (i.e. BWA + Samtools + GATK/VarScan/Mutect).
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* Very easy to use. Need nothing else. No alignment, no reference genome, no variant call, no...
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* Include most actionable mutation points for cancer, like EGFR L858R, BRAF V600E...
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* Very easy to use and need nothing else. No alignment, no reference genome, no variant call, no...
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* Contains most actionable mutation points for cancer, like EGFR L858R, BRAF V600E...
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* Beautiful and informative HTML report with informative pileup visualization.
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* Multi-threading support.
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* Support both single-end and pair-end data.
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* Supports both single-end and pair-end data.
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* For pair-end data, MutScan will try to merge each pair, and do quality adjustment and error correction.
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* Able to scan the mutations in a VCF file, which can be used to visualize called variants.
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* Can be used to filter false-positive mutations, especially for INDEL.
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* Can be used to filter false-positive mutations. i.e. MutScan can handle highly repetive sequence to avoid false INDEL calling.
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# Sample report
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http://opengene.org/MutScan/report.html

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