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lines changed Original file line number Diff line number Diff line change @@ -3,7 +3,7 @@ Detect and visualize target mutations by scanning FastQ files directly
33* Ultra sensitive.
44* 50X+ faster than normal pipeline (i.e. BWA + Samtools + GATK/VarScan/Mutect).
55* Very easy to use and need nothing else. No alignment, no reference genome, no variant call, no...
6- * Contains most actionable mutation points for cancer, like EGFR L858R, BRAF V600E...
6+ * Contains most actionable mutation points for cancer, like EGFR p. L858R, BRAF p. V600E...
77* Beautiful and informative HTML report with informative pileup visualization.
88* Multi-threading support.
99* Supports both single-end and pair-end data.
@@ -67,7 +67,7 @@ mutscan -1 <read1_file_name>
6767
6868# Mutation file
6969* Mutation file, specified by `-m`, can be a `CSV file`, or a `VCF file`.
70- * If no `-m` specified, MutScan will use the built-in default mutation file with about 55 cancer related mutation points.
70+ * If no `-m` specified, MutScan will use the built-in default mutation file with about 60 cancer related mutation points.
7171* If a CSV is provided, no reference genome assembly needed.
7272* If a VCF is provided, corresponding reference genome assembly should be provided (i.e. ucsc.hg19.fasta), and should not be zipped.
7373
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