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README.md

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# MutScan
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Detect important mutations by scanning FastQ files directly
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* Ultra sensitive
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* More than 20x faster than normal pipeline (i.e. BWA + Samtools + GATK/VarScan/Mutect)
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* 20X+ faster than normal pipeline (i.e. BWA + Samtools + GATK/VarScan/Mutect)
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* Very easy to use. Need nothing else. No alignment, no reference assembly, no variant call, no pileup...
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* Beautiful HTML report
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* Multi-threading support

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