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lines changed Original file line number Diff line number Diff line change @@ -28,26 +28,27 @@ Detect and visualize target mutations by scanning FastQ files directly
2828mutscan -1 R1.fq.gz -2 R2.fq.gz
2929```
3030
31- # Download
32- Get latest (may be not stable )
31+ # get mutscan
32+ ## download binary (only for Linux systems, http://opengene.org/MutScan/mutscan )
3333``` shell
34- # download use http
35- https://github.com/OpenGene/MutScan/archive/master.zip
36-
37- # or download use git
38- git clone https://github.com/OpenGene/MutScan.git
34+ # this binary was compiled on CentOS, and tested on CentOS/Ubuntu
35+ wget http://opengene.org/MutScan/mutscan
36+ chmod a+x ./mutscan
3937```
40- Get the stable releases
41- https://github.com/OpenGene/MutScan/releases/latest
42-
43- # Build
44- MutScan only depends on ` libz ` , which is always available on Linux or Mac systems. If your system has no ` libz ` , install it first.
38+ ## or compile from source
4539``` shell
46- cd MutScan
40+ # get source (you can also use browser to download from master or releases)
41+ git clone https://github.com/OpenGene/mutscan.git
42+
43+ # build
44+ cd mutscan
4745make
46+
47+ # Install
48+ sudo make install
4849```
4950
50- # Windows version
51+ # Windows version (may be not the latest version)
5152If you want to compile MutScan on Windows, you should use ` cygwin ` . We already built one with cygwin-2.6.0/g++ 5.4, and it can be downloaded from:
5253http://opengene.org/MutScan/windows_mutscan.zip
5354
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