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README.md

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@@ -28,26 +28,27 @@ Detect and visualize target mutations by scanning FastQ files directly
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mutscan -1 R1.fq.gz -2 R2.fq.gz
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```
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# Download
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Get latest (may be not stable)
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# get mutscan
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## download binary (only for Linux systems, http://opengene.org/MutScan/mutscan)
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```shell
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# download use http
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https://github.com/OpenGene/MutScan/archive/master.zip
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# or download use git
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git clone https://github.com/OpenGene/MutScan.git
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# this binary was compiled on CentOS, and tested on CentOS/Ubuntu
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wget http://opengene.org/MutScan/mutscan
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chmod a+x ./mutscan
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```
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Get the stable releases
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https://github.com/OpenGene/MutScan/releases/latest
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# Build
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MutScan only depends on `libz`, which is always available on Linux or Mac systems. If your system has no `libz`, install it first.
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## or compile from source
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```shell
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cd MutScan
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# get source (you can also use browser to download from master or releases)
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git clone https://github.com/OpenGene/mutscan.git
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# build
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cd mutscan
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make
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# Install
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sudo make install
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```
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# Windows version
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# Windows version (may be not the latest version)
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If you want to compile MutScan on Windows, you should use `cygwin`. We already built one with cygwin-2.6.0/g++ 5.4, and it can be downloaded from:  
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http://opengene.org/MutScan/windows_mutscan.zip
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