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The JATO source code is not available and even if it were, it would be way too outdated to attempt to fix. Decompiling will never yield a perfect result, and is very error prone.
You can also use the transformer-maven-plugin jar goal with jakartaDefaults=true:
https://github.com/eclipse-transformer/transformer/tree/main/maven-plugins/transformer-maven-plugin#jar-goal

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Answer selected by vharseko
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