Skip to content

Commit 25d21a6

Browse files
mgaffiganmgaffigan
committed
Add former entrypoint.sh script, fix name in developers.md
Signed-off-by: Mitch Gaffigan <[email protected]>
1 parent 70e8e87 commit 25d21a6

File tree

5 files changed

+1593
-1349
lines changed

5 files changed

+1593
-1349
lines changed

‎.dockerignore‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -59,4 +59,4 @@ pom.xml.releaseBackup
5959
pom.xml.tag
6060
pom.xml.versionsBackup
6161
release.properties
62-
replay_pid*
62+
replay_pid*

‎DEVELOPERS.md‎

Lines changed: 11 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,14 @@
11
# For developers and contributors
22

3-
## "Easy Path" with docker
3+
## Build and run locally
4+
5+
To build the solution, you must have a Java 1.8 JDK+FX and Apache Ant. This
6+
can be installed by [sdkman](https://sdkman.io/) by executing `sdk env install`.
7+
From the `server/` directory, run `ant -f mirth-build.xml -DdisableSigning=true`.
8+
9+
After build, run the server by invoking `server/setup/oieserver` in bash.
10+
11+
## Build and run with docker
412

513
```bash
614
# Build using docker
@@ -10,25 +18,13 @@ docker build -t oie-dev .
1018
docker run --rm -p 8443:8443 oie-dev
1119
```
1220

21+
## Connect
22+
1323
Then use [Ballista](https://github.com/kayyagari/ballista) to connect to
1424
https://localhost:8443/ and login using admin admin.
1525

16-
## Build Environment
17-
18-
To build the solution, you must have a Java 1.8 JDK+FX and Apache Ant. This
19-
can be installed by [sdkman](https://sdkman.io/) by executing `sdkman env install`.
20-
21-
## Build Process
22-
23-
From the `server/` directory, run `ant -f mirth-build.xml -DdisableSigning=true`.
24-
2526
If you are using Mirth Connect Administrator Launcher, you may need to omit
2627
`-DdisableSigning=true` to support JWS signatures and run MCAL passing `-k -d`
2728
to make it ignore self-signed certificates. Launchers like
2829
[Ballista](https://github.com/kayyagari/ballista) do not require signing, and
2930
signing adds considerable time to the build process.
30-
31-
## Run
32-
33-
After build, run the server by invoking `server/mirth-server-launcher.jar`. An
34-
example of how to do this is listed in `docker/mirth-connect.sh`.

‎Dockerfile‎

Lines changed: 3 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -43,7 +43,6 @@ RUN groupadd engine \
4343
&& chown -R engine:engine /opt/engine
4444

4545
WORKDIR /opt/engine
46-
COPY --chmod=0755 docker/entrypoint.sh ./
4746
COPY --chown=engine:engine --from=builder \
4847
--exclude=cli-lib \
4948
--exclude=mirth-cli-launcher.jar \
@@ -58,7 +57,7 @@ VOLUME /opt/engine/custom-extensions
5857
EXPOSE 8443
5958

6059
USER engine
61-
ENTRYPOINT ["./entrypoint.sh"]
60+
ENTRYPOINT ["./configure-from-env.sh"]
6261
CMD ["./oieserver"]
6362

6463
##########################################
@@ -78,7 +77,6 @@ RUN addgroup -S engine \
7877
&& chown -R engine:engine /opt/engine
7978

8079
WORKDIR /opt/engine
81-
COPY --chmod=0755 docker/entrypoint.sh ./
8280
COPY --chown=engine:engine --from=builder \
8381
--exclude=cli-lib \
8482
--exclude=mirth-cli-launcher.jar \
@@ -94,5 +92,5 @@ VOLUME /opt/engine/custom-extensions
9492
EXPOSE 8443
9593

9694
USER engine
97-
ENTRYPOINT ["./entrypoint.sh"]
98-
CMD ["./oieserver"]
95+
ENTRYPOINT ["./configure-from-env.sh"]
96+
CMD ["./oieserver"]

‎server/basedir-includes/configure-from-env.sh‎

Lines changed: 247 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,247 @@
1+
#!/usr/bin/env bash
2+
#
3+
# SPDX-License-Identifier: MPL-2.0
4+
# SPDX-FileCopyrightText: 2023 NextGen Healthcare
5+
#
6+
7+
set -e
8+
9+
APP_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )"
10+
11+
custom_extension_count=`ls -1 "$APP_DIR"/custom-extensions/*.zip 2>/dev/null | wc -l`
12+
if [ $custom_extension_count != 0 ]; then
13+
echo "Found ${custom_extension_count} custom extensions."
14+
for extension in $(ls -1 "$APP_DIR"/custom-extensions/*.zip); do
15+
unzip -o -q $extension -d "$APP_DIR/extensions"
16+
done
17+
fi
18+
19+
# set storepass and keypass to 'changeme' so they aren't overwritten later
20+
KEYSTORE_PASS=changeme
21+
sed -i "s/^keystore\.storepass\s*=\s*.*\$/keystore.storepass = ${KEYSTORE_PASS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
22+
sed -i "s/^keystore\.keypass\s*=\s*.*\$/keystore.keypass = ${KEYSTORE_PASS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
23+
24+
# merge the environment variables into /opt/engine/conf/mirth.properties
25+
# db type
26+
if ! [ -z "${DATABASE+x}" ]; then
27+
sed -i "s/^database\s*=\s*.*\$/database = ${DATABASE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
28+
fi
29+
30+
# db username
31+
if ! [ -z "${DATABASE_USERNAME+x}" ]; then
32+
sed -i "s/^database\.username\s*=\s*.*\$/database.username = ${DATABASE_USERNAME//\//\\/}/" "$APP_DIR/conf/mirth.properties"
33+
fi
34+
35+
# db password
36+
if ! [ -z "${DATABASE_PASSWORD+x}" ]; then
37+
sed -i "s/^database\.password\s*=\s*.*\$/database.password = ${DATABASE_PASSWORD//\//\\/}/" "$APP_DIR/conf/mirth.properties"
38+
fi
39+
40+
# db url
41+
if ! [ -z "${DATABASE_URL+x}" ]; then
42+
sed -i "s/^database\.url\s*=\s*.*\$/database.url = ${DATABASE_URL//\//\\/}/" "$APP_DIR/conf/mirth.properties"
43+
fi
44+
45+
# database max connections
46+
if ! [ -z "${DATABASE_MAX_CONNECTIONS+x}" ]; then
47+
sed -i "s/^database\.max-connections\s*=\s*.*\$/database.max-connections = ${DATABASE_MAX_CONNECTIONS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
48+
fi
49+
50+
# database max retries
51+
if ! [ -z "${DATABASE_MAX_RETRY+x}" ]; then
52+
sed -i "s/^database\.connection\.maxretry\s*=\s*.*\$/database.connection.maxretry = ${DATABASE_MAX_RETRY//\//\\/}/" "$APP_DIR/conf/mirth.properties"
53+
fi
54+
55+
# database retry wait time
56+
if ! [ -z "${DATABASE_RETRY_WAIT+x}" ]; then
57+
sed -i "s/^database\.connection\.retrywaitinmilliseconds\s*=\s*.*\$/database.connection.retrywaitinmilliseconds = ${DATABASE_RETRY_WAIT//\//\\/}/" "$APP_DIR/conf/mirth.properties"
58+
fi
59+
60+
# keystore storepass
61+
if ! [ -z "${KEYSTORE_STOREPASS+x}" ]; then
62+
sed -i "s/^keystore\.storepass\s*=\s*.*\$/keystore.storepass = ${KEYSTORE_STOREPASS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
63+
fi
64+
65+
# keystore keypass
66+
if ! [ -z "${KEYSTORE_KEYPASS+x}" ]; then
67+
sed -i "s/^keystore\.keypass\s*=\s*.*\$/keystore.keypass = ${KEYSTORE_KEYPASS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
68+
fi
69+
70+
if ! [ -z "${KEYSTORE_TYPE+x}" ]; then
71+
sed -i "s/^keystore\.type\s*=\s*.*\$/keystore.type = ${KEYSTORE_TYPE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
72+
fi
73+
74+
# session store
75+
if ! [ -z "${SESSION_STORE+x}" ]; then
76+
LINE_COUNT=`grep "server.api.sessionstore" "$APP_DIR/conf/mirth.properties" | wc -l`
77+
if [ $LINE_COUNT -lt 1 ]; then
78+
echo -e "\nserver.api.sessionstore = ${SESSION_STORE//\//\\/}" >> "$APP_DIR/conf/mirth.properties"
79+
else
80+
sed -i "s/^server\.api\.sessionstore\s*=\s*.*\$/server.api.sessionstore = ${SESSION_STORE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
81+
fi
82+
fi
83+
84+
#server ID
85+
if ! [ -z "${SERVER_ID+x}" ]; then
86+
echo -e "server.id = ${SERVER_ID//\//\\/}" > "$APP_DIR/appdata/server.id"
87+
fi
88+
89+
# merge extra environment variables starting with _MP_ into mirth.properties
90+
while read -r keyvalue; do
91+
KEY="${keyvalue%%=*}"
92+
VALUE="${keyvalue#*=}"
93+
VALUE=$(tr -dc '\40-\176' <<< "$VALUE")
94+
95+
if ! [ -z "${KEY}" ] && ! [ -z "${VALUE}" ] && ! [[ ${VALUE} =~ ^\ +$ ]]; then
96+
97+
# filter for variables starting with "_MP_"
98+
if [[ ${KEY} == _MP_* ]]; then
99+
100+
# echo "found property ${KEY}=${VALUE}"
101+
102+
# example: _MP_DATABASE_MAX__CONNECTIONS -> database.max-connections
103+
104+
# remove _MP_
105+
# example: DATABASE_MAX__CONNECTIONS
106+
ACTUAL_KEY=${KEY:4}
107+
108+
# switch '__' to '-'
109+
# example: DATABASE_MAX-CONNECTIONS
110+
ACTUAL_KEY="${ACTUAL_KEY//__/-}"
111+
112+
# switch '_' to '.'
113+
# example: DATABASE.MAX-CONNECTIONS
114+
ACTUAL_KEY="${ACTUAL_KEY//_/.}"
115+
116+
# lower case
117+
# example: database.max-connections
118+
ACTUAL_KEY="${ACTUAL_KEY,,}"
119+
120+
# if key does not exist in mirth.properties append it at bottom
121+
LINE_COUNT=`grep "^${ACTUAL_KEY}" "$APP_DIR/conf/mirth.properties" | wc -l`
122+
if [ $LINE_COUNT -lt 1 ]; then
123+
# echo "key ${ACTUAL_KEY} not found in mirth.properties, appending. Value = ${VALUE}"
124+
echo -e "\n${ACTUAL_KEY} = ${VALUE//\//\\/}" >> "$APP_DIR/conf/mirth.properties"
125+
else # otherwise key exists, overwrite it
126+
# echo "key ${ACTUAL_KEY} exists, overwriting. Value = ${VALUE}"
127+
ESCAPED_KEY="${ACTUAL_KEY//./\\.}"
128+
sed -i "s/^${ESCAPED_KEY}\s*=\s*.*\$/${ACTUAL_KEY} = ${VALUE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
129+
fi
130+
fi
131+
fi
132+
done <<< "`printenv`"
133+
134+
# merge vmoptions into /opt/engine/oieserver.vmoptions
135+
if ! [ -z "${VMOPTIONS+x}" ]; then
136+
PREV_IFS="$IFS"
137+
IFS=","
138+
read -ra vmoptions <<< "$VMOPTIONS"
139+
IFS="$PREV_IFS"
140+
141+
for vmoption in "${vmoptions[@]}"
142+
do
143+
echo "${vmoption}" >> "$APP_DIR/oieserver.vmoptions"
144+
done
145+
fi
146+
147+
# merge the user's secret mirth.properties
148+
# takes a whole mirth.properties file and merges line by line with /opt/engine/conf/mirth.properties
149+
if [ -f /run/secrets/mirth_properties ]; then
150+
151+
# add new line in case /opt/engine/conf/mirth.properties doesn't end with one
152+
echo "" >> "$APP_DIR/conf/mirth.properties"
153+
154+
while read -r keyvalue; do
155+
KEY="${keyvalue%%=*}"
156+
VALUE="${keyvalue#*=}"
157+
158+
# remove leading and trailing white space
159+
KEY="$(echo -e "${KEY}" | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//')"
160+
VALUE="$(echo -e "${VALUE}" | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//')"
161+
162+
if ! [ -z "${KEY}" ] && ! [ -z "${VALUE}" ] && ! [[ ${VALUE} =~ ^\ +$ ]]; then
163+
# if key does not exist in mirth.properties append it at bottom
164+
LINE_COUNT=`grep "^${KEY}" "$APP_DIR/conf/mirth.properties" | wc -l`
165+
if [ $LINE_COUNT -lt 1 ]; then
166+
# echo "key ${KEY} not found in mirth.properties, appending. Value = ${VALUE}"
167+
echo -e "${KEY} = ${VALUE//\//\\/}" >> "$APP_DIR/conf/mirth.properties"
168+
else # otherwise key exists, overwrite it
169+
# echo "key ${KEY} exists, overwriting. Value = ${VALUE}"
170+
ESCAPED_KEY="${KEY//./\\.}"
171+
sed -i "s/^${ESCAPED_KEY}\s*=\s*.*\$/${KEY} = ${VALUE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
172+
fi
173+
fi
174+
done <<< "`cat /run/secrets/mirth_properties`"
175+
fi
176+
177+
# merge the user's secret vmoptions
178+
# takes a whole oieserver.vmoptions file and merges line by line with /opt/engine/oieserver.vmoptions
179+
if [ -f /run/secrets/oieserver_vmoptions ]; then
180+
(cat /run/secrets/oieserver_vmoptions ; echo "") >> "$APP_DIR/oieserver.vmoptions"
181+
fi
182+
183+
# download jars from this url "$CUSTOM_JARS_DOWNLOAD", set by user
184+
if ! [ -z "${CUSTOM_JARS_DOWNLOAD+x}" ]; then
185+
echo "Downloading Jars at ${CUSTOM_JARS_DOWNLOAD}"
186+
if ! [ -z "${ALLOW_INSECURE}" ] && [ "${ALLOW_INSECURE}" == "true" ]; then
187+
curl -ksSLf "${CUSTOM_JARS_DOWNLOAD}" -o userJars.zip || echo "problem with custom jars download"
188+
else
189+
curl -sSLf "${CUSTOM_JARS_DOWNLOAD}" -o userJars.zip || echo "problem with custom jars download"
190+
fi
191+
192+
# Unzipping contents of userJars.zip into /opt/engine/server-launcher-lib folder
193+
if [ -e "userJars.zip" ]; then
194+
echo "Unzipping contents of userJars.zip into $APP_DIR/server-launcher-lib"
195+
unzip userJars.zip -d "$APP_DIR/server-launcher-lib"
196+
# removing the downloaded zip file
197+
rm userJars.zip
198+
fi
199+
fi
200+
201+
# download extensions from this url "$EXTENSIONS_DOWNLOAD", set by user
202+
if ! [ -z "${EXTENSIONS_DOWNLOAD+x}" ]; then
203+
echo "Downloading extensions at ${EXTENSIONS_DOWNLOAD}"
204+
if ! [ -z "${ALLOW_INSECURE}" ] && [ "${ALLOW_INSECURE}" == "true" ]; then
205+
curl -ksSLf "${EXTENSIONS_DOWNLOAD}" -o userExtensions.zip || echo "problem with extensions download"
206+
else
207+
curl -sSLf "${EXTENSIONS_DOWNLOAD}" -o userExtensions.zip || echo "problem with extensions download"
208+
fi
209+
210+
# Unzipping contents of userExtensions.zip
211+
if [ -e "userExtensions.zip" ]; then
212+
echo "Unzipping contents of userExtensions.zip"
213+
mkdir /tmp/userextensions
214+
unzip userExtensions.zip -d /tmp/userextensions
215+
# removing the downloaded zip file
216+
rm userExtensions.zip
217+
218+
# Unzipping contents of individual extension zip files into /opt/engine/extensions folder
219+
zipFileCount=`ls -1 /tmp/userextensions/*.zip 2>/dev/null | wc -l`
220+
if [ $zipFileCount != 0 ]; then
221+
echo "Unzipping contents of /tmp/userextensions/ zips into $APP_DIR/extensions"
222+
for f in /tmp/userextensions/*.zip; do unzip "$f" -d "$APP_DIR/extensions"; done
223+
fi
224+
# removing the tmp folder
225+
rm -rf /tmp/userextensions
226+
fi
227+
fi
228+
229+
# download keystore
230+
if ! [ -z "${KEYSTORE_DOWNLOAD+x}" ]; then
231+
echo "Downloading keystore at ${KEYSTORE_DOWNLOAD}"
232+
if ! [ -z "${ALLOW_INSECURE}" ] && [ "${ALLOW_INSECURE}" == "true" ]; then
233+
curl -ksSLf "${KEYSTORE_DOWNLOAD}" -o "$APP_DIR/appdata/keystore.jks" || echo "problem with keystore download"
234+
else
235+
curl -sSLf "${KEYSTORE_DOWNLOAD}" -o "$APP_DIR/appdata/keystore.jks" || echo "problem with keystore download"
236+
fi
237+
fi
238+
239+
# if delay is set as an environment variable then wait that long in seconds
240+
if ! [ -z "${DELAY+x}" ]; then
241+
sleep $DELAY
242+
fi
243+
244+
# if there are any arguments, invoke them as a command
245+
if [ $# -ne 0 ]; then
246+
exec "$@"
247+
fi

0 commit comments

Comments
 (0)