Remove PhosphoScoring.py, runPhosphoScoring.py and GUI_*.py files from examples (#490)

* Initial plan

* chore: remove PhosphoScoring.py and GUI_*.py files from examples

Co-authored-by: timosachsenberg <[email protected]>

* chore: remove runPhosphoScoring.py and update README.md

Co-authored-by: timosachsenberg <[email protected]>

---------

Co-authored-by: copilot-swe-agent[bot] <[email protected]>
Co-authored-by: timosachsenberg <[email protected]>
Co-authored-by: Timo Sachsenberg <[email protected]>

Author: Copilot