Merge branch 'main' of github.com:OpenMS/pyopenms_viz

Author: jcharkow

docs/requirements.txt

@@ -8,7 +8,7 @@ accessible-pygments==0.0.5
     # via pydata-sphinx-theme
 alabaster==1.0.0
     # via sphinx
-asttokens==3.0.0
+asttokens==3.0.1
     # via stack-data
 attrs==25.4.0
     # via
@@ -22,19 +22,19 @@ beautifulsoup4==4.14.3
     # via
     #   nbconvert
     #   pydata-sphinx-theme
-bleach[css]==6.2.0
+bleach[css]==6.3.0
     # via nbconvert
 bokeh==3.6.2
     # via pyopenms_viz (pyproject.toml)
 cairocffi==1.7.1
     # via cairosvg
-cairosvg==2.7.1
+cairosvg==2.8.2
     # via pyopenms_viz (pyproject.toml)
 certifi==2026.1.4
     # via requests
-cffi==1.17.1
+cffi==2.0.0
     # via cairocffi
-charset-normalizer==3.4.1
+charset-normalizer==3.4.4
     # via requests
 comm==0.2.3
     # via ipykernel
@@ -61,13 +61,13 @@ docutils==0.21.2
     #   nbsphinx
     #   pydata-sphinx-theme
     #   sphinx
-executing==2.1.0
+executing==2.2.1
     # via stack-data
 fastjsonschema==2.21.2
     # via nbformat
 fonttools==4.61.1
     # via matplotlib
-idna==3.10
+idna==3.11
     # via requests
 imagesize==1.4.1
     # via sphinx
@@ -158,7 +158,7 @@ parso==0.8.5
     # via jedi
 pexpect==4.9.0
     # via ipython
-pillow==11.1.0
+pillow==12.1.0
     # via
     #   bokeh
     #   cairosvg
@@ -179,7 +179,7 @@ ptyprocess==0.7.0
     # via pexpect
 pure-eval==0.2.3
     # via stack-data
-pycparser==2.23
+pycparser==3.0
     # via cffi
 pydata-sphinx-theme==0.16.1
     # via pyopenms_viz (pyproject.toml)
@@ -192,7 +192,7 @@ pygments==2.19.2
     #   sphinx
 pymzml==2.6.0
     # via pyopenms_viz (pyproject.toml)
-pyparsing==3.3.1
+pyparsing==3.3.2
     # via matplotlib
 pytest==8.3.4
     # via
@@ -258,7 +258,7 @@ stack-data==0.6.3
     # via ipython
 syrupy==4.8.0
     # via pyopenms_viz (pyproject.toml)
-tenacity==9.0.0
+tenacity==9.1.2
     # via plotly
 tinycss2==1.4.0
     # via
@@ -286,7 +286,7 @@ typing-extensions==4.15.0
     # via pydata-sphinx-theme
 tzdata==2025.3
     # via pandas
-urllib3==2.3.0
+urllib3==2.6.3
     # via requests
 wcwidth==0.2.14
     # via prompt-toolkit

pyopenms_viz/__init__.py

@@ -11,7 +11,7 @@
 from pathlib import Path
 from ._core import plot_chromatogram, plot_spectrum, plot_mobilogram, plot_peakmap
 
-__version__ = "1.0.0"
+__version__ = "1.0.1"
 
 
 def TEST_DATA_PATH():

pyproject.toml

@@ -7,7 +7,7 @@ name = "pyopenms_viz"
 authors = [
     {name = "OpenMS Team", email = "[email protected]"},
 ]
-version = "1.0.0"
+version = "1.0.1"
 description = "A package for visualizing mass spectrometry data using pandas dataframes"
 readme = "README.md"
 classifiers = [

requirements.txt

@@ -164,7 +164,7 @@ parso==0.8.5
     # via jedi
 pexpect==4.9.0
     # via ipython
-pillow==12.0.0
+pillow==12.1.0
     # via
     #   bokeh
     #   cairosvg
@@ -185,7 +185,7 @@ ptyprocess==0.7.0
     # via pexpect
 pure-eval==0.2.3
     # via stack-data
-pycparser==2.23
+pycparser==3.0
     # via cffi
 pydata-sphinx-theme==0.16.1
     # via pyopenms_viz (pyproject.toml)
@@ -200,7 +200,7 @@ pygments==2.19.2
     #   sphinx
 pymzml==2.6.0
     # via pyopenms_viz (pyproject.toml)
-pyparsing==3.3.1
+pyparsing==3.3.2
     # via matplotlib
 pytest==9.0.2
     # via
@@ -296,7 +296,7 @@ typing-extensions==4.15.0
     #   referencing
 tzdata==2025.3
     # via pandas
-urllib3==2.6.1
+urllib3==2.6.3
     # via requests
 wcwidth==0.2.14
     # via prompt-toolkit