testing.yaml

name: Testing

on:
  workflow_dispatch:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main

jobs:
  Formatting:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - name: Formatting
        uses: super-linter/super-linter@v8
        env:
          VALIDATE_ALL_CODEBASE: false
          DEFAULT_BRANCH: main
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
          VALIDATE_YAML_PRETTIER: true
          VALIDATE_MARKDOWN_PRETTIER: true
          VALIDATE_PYTHON_BLACK: true

  Testing:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.8", "3.10", "3.12", "3.14"]
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache: pip
      - name: Test DAG visualization
        run: |
          python -m pip install --upgrade pip
          python -m pip install .
          snakevision \
              -s all multiqc \
              -y scale=15.0 node_stroke=white edge_stroke_width=3 \
              -o examples/atac_dag_test.svg \
              examples/atac_rulegraph.dot