Merge pull request #21 from OpenProteinAI/develop

Develop

Author: Michael-Bar

.github/workflows/s3.yaml

@@ -12,6 +12,11 @@ jobs:
     steps:
     - uses: actions/checkout@v1
 
+    - name: Install Pandoc
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y pandoc
+
     - name: Set up Python
       uses: actions/setup-python@v2
       with:
@@ -20,13 +25,13 @@ jobs:
     - name: Install Sphinx
       run: |
         python -m pip install --upgrade pip
-        pip install sphinx recommonmark sphinx_markdown_tables sphinx_markdown_builder nbsphinx sphinx-rtd-theme pandoc
+        pip install sphinx recommonmark sphinx_markdown_tables sphinx_markdown_builder nbsphinx sphinx-rtd-theme pandas requests tqdm pydantic
 
     - name: Build HTML with Sphinx
       run: |
         cd apidocs
         make html
-
+  
     - name: Get bucket name
       shell: bash
       run: |
@@ -65,7 +70,7 @@ jobs:
         AWS_S3_BUCKET: ${{ steps.bucket_name.outputs.bucket }}
       shell: bash
       run: |
-        aws s3 sync apidocs/_build/html s3://${AWS_S3_BUCKET}/apidocs/
+        aws s3 sync apidocs/build/html s3://${AWS_S3_BUCKET}/apidocs/
 
     - name: Invalidate CloudFront cache
       env:

README.md

@@ -1,5 +1,5 @@
 [![PyPI version](https://badge.fury.io/py/openprotein-python.svg)](https://pypi.org/project/openprotein-python/)
-[![Coverage](./apidocs/source/coverage.svg)](https://pypi.org/project/openprotein-python/)
+[![Coverage](https://dev.docs.openprotein.ai/api-python/_images/coverage.svg)](https://pypi.org/project/openprotein-python/)
 
 # openprotein-python
 Python interface for the OpenProtein.AI REST API.
@@ -9,7 +9,7 @@ Python interface for the OpenProtein.AI REST API.
 You can install with pip: 
 
 ```
-pip install openprotein
+pip install openprotein-python
 ```
 ## Getting started
 

apidocs/build/doctrees/environment.pickle

@@ -8,7 +8,8 @@
 
 import os
 import sys
-sys.path.insert(0, os.path.abspath('../..'))
+sys.path.insert(0, os.path.abspath('../../'))
+print("HERE", sys.path)
 
 
 project = 'OpenProtein-Python'

apidocs/build/html/searchindex.js

@@ -1,6 +1,10 @@
 try:
     from importlib.metadata import version
-except ImportError:
-    from importlib_metadata import version # py 3.7
+except ModuleNotFoundError:
+    from importlib_metadata import version # py37
+
+try:
+    __version__ = version("openprotein-python")
+except: 
+    __version__ = "None"
 
-__version__ = version("openprotein-python")

apidocs/source/conf.py

@@ -1,7 +1,7 @@
 [tool.poetry]
 name = "openprotein_python"
 packages = [{include = "openprotein"}]
-version = "0.1.1b11"
+version = "0.1.1b17"
 description = "OpenProtein Python interface."
 license = "MIT"
 readme = "README.md"