00mooc_mod5_Part4_appendix.html

<div id="appendix" class="section level2">
<h2>Appendix</h2>
<p>However, your Open Source journey does not stop here! This was just the beginning, and there are some incredible resources out there if you would like to do or learn more:</p>
<ul>
<li><p>If you feel particularly inspired by this, you can endorse the <a href="http://sciencecodemanifesto.org/">Science Code Manifesto</a>, which is based on the five principles of code, copyright, citation, credit, and curation.</p></li>
<li><p>To launch and develop your own project, the <a href="https://opensource.guide/">Open Source Guides</a> program offers a range of practical guides and skills to help launch and advance your OSS projects.</p></li>
<li><p>For a detailed look at OSS-based research workflows, the <a href="https://pfern.github.io/OSODOS/gitbook/">Open Science, Open Data, Open Source</a> hand-guide by Pedro L. Fernandes and Rutger A. Vos is one of the top resources online.</p></li>
<li><p>More formalised journal venues also exist for software-based articles, including <a href="https://openresearchsoftware.metajnl.com/">The Journal of Open Research Software</a> and <a href="https://joss.theoj.org/">The Journal of Open Source Software</a>. A list of such venues is also <a href="https://www.software.ac.uk/which-journals-should-i-publish-my-software">available</a>.</p></li>
<li><p>The <a href="https://channels.plos.org/open-source-toolkit">PLOS Open Source Toolkit</a> provides a global forum for Open Source hardware and software research and applications.</p></li>
<li><p>The <a href="http://www.numfocus.org">NumFOCUS</a> is a nonprofit organization that supports and promotes world-class, innovative, open source scientific software. Some of the projects they sponsor include:</p>
<ul>
<li><p><a href="http://ipython.org">IPython</a> and <a href="https://jupyter.org">Jupyter Notebook</a> initiatives.</p></li>
<li><p><a href="http://ropensci.org">rOpenSci</a>, which promotes the open source R statistical environment for transparent and reproducible research.</p></li>
<li><p>To gain more hands on experience with OSS, the <a href="https://software-carpentry.org/">Software Carpentry</a> community holds regular workshops to improve lab-based computing skills (<a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Wilson%20et%20al.%2C%202017.pdf">Wilson et al., 2017</a>).</p></li>
</ul></li>
</ul>
<p><br /></p>
<div id="further-reading" class="section level3">
<h3>Further reading <a name="Reading"></a></h3>
<p><em>These references here are just the beginning. They include some of the most useful general overviews of the Open Source landscape in research. However, if you want to be find something more specific to your own research field, then that path is there for you to explore!</em></p>
<ul>
<li><p>The Future of Research in Free/Open Source Software Development <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Scacchi%2C%202010.pdf">(Scacchi, 2010)</a>.</p></li>
<li><p>The Scientific Method in Practice: Reproducibility in the Computational Sciences <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Stodden%2C%202010.pdf">(Stodden, 2010)</a>.</p></li>
<li><p>The case for open computer programs <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Ince%20et%20al.%2C%202012.pdf">(Ince et al., 2012)</a>.</p></li>
<li><p>Current issues and research trends on open-source software communities <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Martinez-Torres%20and%20Diaz-Fernandez%2C%202013.pdf">(Martinez-Torres and Diaz-Fernandez, 2013)</a>.</p></li>
<li><p>Ten simple rules for reproducible computational research <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Sandve%20et%20al.%2C%202013.PDF">(Sandve et al., 2013)</a>.</p></li>
<li><p>A systematic literature review on the barriers faced by newcomers to open source software projects <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Steinmacher%20et%20al.%2C%202014.pdf">(Steinmacher et al., 2014)</a>.</p></li>
<li><p>Knowledge sharing in open source software communities: motivations and management <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Iskoujina%20and%20Roberts%2C%202015.pdf">(Iskoujina and Roberts, 2015)</a>.</p></li>
<li><p>Software citation principles <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Smith%20et%20al.%2C%202016.pdf">(Smith et al., 2016)</a>.</p></li>
<li><p>An introduction to Rocker: Docker containers for R <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Boettiger%20and%20Eddelbuettel%2C%202017.pdf">(Boettiger and Eddelbuettel, 2017)</a>.</p></li>
<li><p>Good enough practices in scientific computing <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Wilson%20et%20al.%2C%202017.pdf">(Wilson et al., 2017)</a>.</p></li>
<li><p>Four simple recommendations to encourage best practices in research software <a href="https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/blob/master/Reading_Material_OSS/Jim%C3%A9nez%20et%20al.%2C%202018.pdf">(Jiménez et al., 2017)</a>.</p></li>
</ul>
<p><br /></p>
</div>
<div id="development-team" class="section level3">
<h3>Development Team <a name="Development_team"></a></h3>
<ul>
<li><a href="https://twitter.com/alex__morley">Alex Morley</a>, Open Sourceror, University of Oxford, UK.</li>
<li><a href="https://twitter.com/KMMoerman">Kevin Moerman</a>, Open Sourceror, MIT, USA.</li>
<li><a href="https://twitter.com/ixek">Tania Allard</a>, Open Sourceress, Data Enchantress, University of Leeds, UK.</li>
<li><a href="https://twitter.com/mrchristian99">Simon Worthington</a>, Book Liberationist, TIB, Germany.</li>
<li><a href="https://twitter.com/pcmasuzzo">Paola Masuzzo</a>, Open Source Batman, Italy.</li>
<li><a href="https://twitter.com/OAforClimate">Ivo Grigorov</a>, Open Source Robin, Denmark.</li>
<li><a href="https://twitter.com/rvosa">Rutger Vos</a>, Open Sourceror, Naturalis Biodiversity Center, the Netherlands.</li>
<li><a href="https://twitter.com/j_colomb">Julien Colomb</a>, Open Ninja, Berlin.</li>
<li><a href="https://twitter.com/protohedgehog">Jon Tennant</a>, Dinosaur Whisperer.</li>
</ul>
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