Split

Author: pgleeson

.github/workflows/non-omv.yml

@@ -65,8 +65,10 @@ jobs:
          cd CellTypesDatabase/models
          nrnivmodl  NEURON
 
-         echo "Parsing all.."
+         echo "-----   Parsing perisomatic.."
          python ParseAll.py
+         echo "-----   Parsing all active.."
+         python ParseAll.py -all_active
          ls -alt NeuroML2
 
     - name: Tune data

CellTypesDatabase/models/ParseAll.py

@@ -47,6 +47,9 @@
 
 print("PA >> Parsing cell dirs: %s" % cell_dirs)
 
+do_all_active = '-all_active' in sys.argv
+
+completed = []
 for model_id in cell_dirs:
 
     count+=1
@@ -65,10 +68,14 @@
 
     # configure NEURON
     if all_active:
-        #continue # skip this...
+        if not do_all_active:
+            print('Not proceeding with this file...')
+            continue # skip this...
         utils = AllActiveUtils(description, axon_type='stub') # all-active type
     else:
-        continue # skip this...
+        if do_all_active:
+            print('Not proceeding with this file...')
+            continue # skip this...
         utils = Utils(description) # perisomatic type
 
 
@@ -391,6 +398,7 @@
     inst.location = neuroml.Location(x=300*X, y=0, z=300*Z)
 
     print('PA >> Adding to network of all cells at: %s'%inst.location)
+    completed.append(model_id)
 
 
 net_file = '%s/%s.net.nml'%(nml2_cell_dir,net_ref)
@@ -400,4 +408,4 @@
 
 pynml.nml2_to_svg(net_file, verbose=False)
 
-print("PA >> Finished parsing cell dirs: %s" % cell_dirs)
+print("PA >> Finished parsing cell dirs: %s" % completed)