Skip to content

Commit 9d22882

Browse files
committed
Generated channel info for channelpedia channels
1 parent 8903e27 commit 9d22882

File tree

81 files changed

+1395
-3
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

81 files changed

+1395
-3
lines changed

Channelpedia/Cav2.1.channel.nml

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_Ca_P_Q_5">
2-
<ionChannelHH id="Channelpedia_Ca_P_Q_5" conductance="10pS" species="Ca">
2+
<ionChannelHH id="Channelpedia_Ca_P_Q_5" species="Ca" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
4-
The original model can be found at: http://channelpedia.epfl.ch/ionchannels/78
4+
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/78
55

66
Conversion scripts at https://github.com/OpenSourceBrain/BlueBrainProjectShowcase</notes>
77

Channelpedia/HCN1.channel.nml

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_HCN1_9">
2-
<ionChannelHH id="Channelpedia_HCN1_9" conductance="10pS" species="Hcn">
2+
<ionChannelHH id="Channelpedia_HCN1_9" species="Hcn" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
44
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/61
55

Channelpedia/test/analyse_chans.sh

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,6 @@
1+
2+
pynml-channelanalysis Channelpedia_*.nml \
3+
-caConc 0.00043 -temperature 26 -datSuffix '.26' -minV -100 -maxV 60 -html -md
4+
5+
6+

Channelpedia/test/channel_summary/ChannelInfo.html

Lines changed: 694 additions & 0 deletions
Large diffs are not rendered by default.
42.3 KB
43 KB
42.2 KB
31.7 KB
42.9 KB
41.3 KB

0 commit comments

Comments
 (0)