Skip to content

Commit cc1be78

Browse files
pgleesonpgleeson
committed
Retested test_all.py & regenerated
1 parent 1fd742e commit cc1be78

File tree

48 files changed

+95
-94
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

48 files changed

+95
-94
lines changed

‎.gitignore‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -20,7 +20,7 @@ x86_64
2020
/Channelpedia/test/*.xml
2121
/Channelpedia/unknowns
2222
Channelpedia/*.dat
23-
Channelpedia/LEMS_Test_k*
23+
Channelpedia/LEMS_Test*
2424

2525
Channelpedia/test/html
2626
*.pyc

‎Channelpedia/analyse.py‎

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -16,6 +16,7 @@
1616

1717
def generate(channel_file, channel, gates, temperature, ion = '?'):
1818

19+
print("Generating LEMS analyser for %s"%channel_file)
1920
ca_conc = 1e-5
2021
ion = ion.lower()
2122
print('---- Generating for %s in %s (gates: %s) with ion: %s'%(channel, channel_file, gates, ion))

‎Channelpedia/test/Channelpedia_ABasic_13.channel.nml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
1-
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_ABasic_13">
2-
<ionChannelHH id="Channelpedia_ABasic_13" conductance="10pS" species="UA">
1+
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd" id="Channelpedia_ABasic_13">
2+
<ionChannelHH id="Channelpedia_ABasic_13" species="UA" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
44
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/211
55

‎Channelpedia/test/Channelpedia_CaN_6.channel.nml.broken‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
1-
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_CaN_6">
2-
<ionChannelHH id="Channelpedia_CaN_6" conductance="10pS" species="Ca">
1+
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd" id="Channelpedia_CaN_6">
2+
<ionChannelHH id="Channelpedia_CaN_6" species="Ca" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
44
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/79
55

‎Channelpedia/test/Channelpedia_Ca_LVA_3.channel.nml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
1-
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_Ca_LVA_3">
2-
<ionChannelHH id="Channelpedia_Ca_LVA_3" conductance="10pS" species="Ca">
1+
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd" id="Channelpedia_Ca_LVA_3">
2+
<ionChannelHH id="Channelpedia_Ca_LVA_3" species="Ca" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
44
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/212
55

‎Channelpedia/test/Channelpedia_Ca_LVAs_4.channel.nml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
1-
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_Ca_LVAs_4">
2-
<ionChannelHH id="Channelpedia_Ca_LVAs_4" conductance="10pS" species="Ca">
1+
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd" id="Channelpedia_Ca_LVAs_4">
2+
<ionChannelHH id="Channelpedia_Ca_LVAs_4" species="Ca" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
44
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/212
55

‎Channelpedia/test/Channelpedia_Ca_P_Q_5.channel.nml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
1-
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_Ca_P_Q_5">
2-
<ionChannelHH id="Channelpedia_Ca_P_Q_5" conductance="10pS" species="Ca">
1+
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd" id="Channelpedia_Ca_P_Q_5">
2+
<ionChannelHH id="Channelpedia_Ca_P_Q_5" species="Ca" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
44
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/78
55

‎Channelpedia/test/Channelpedia_Ca_R_7.channel.nml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
1-
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_Ca_R_7">
2-
<ionChannelHH id="Channelpedia_Ca_R_7" conductance="10pS" species="Ca">
1+
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd" id="Channelpedia_Ca_R_7">
2+
<ionChannelHH id="Channelpedia_Ca_R_7" species="Ca" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
44
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/82
55

‎Channelpedia/test/Channelpedia_Cav3_1_41.channel.nml.broken‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
1-
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_Cav3_1_41">
2-
<ionChannelHH id="Channelpedia_Cav3_1_41" conductance="10pS" species="Ca">
1+
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd" id="Channelpedia_Cav3_1_41">
2+
<ionChannelHH id="Channelpedia_Cav3_1_41" species="Ca" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
44
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/85
55

‎Channelpedia/test/Channelpedia_Cav3_3_42.channel.nml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
1-
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Channelpedia_Cav3_3_42">
2-
<ionChannelHH id="Channelpedia_Cav3_3_42" conductance="10pS" species="Ca">
1+
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd" id="Channelpedia_Cav3_3_42">
2+
<ionChannelHH id="Channelpedia_Cav3_3_42" species="Ca" conductance="10pS">
33
<notes>This is an automated conversion to NeuroML 2 of an ion channel model from Channelpedia.
44
The original channel model file can be found at: http://channelpedia.epfl.ch/ionchannels/87
55

0 commit comments

Comments
 (0)