Test cond change

Author: pgleeson

NeuroML2/osbSessions/14a.html

@@ -11,6 +11,8 @@
         and finally to <i class="fa fa-circle" style="color:#649615"></i> (completed),
         or <i class="fa fa-circle" style="color:red"></i> if there has been a problem running the simulation.</p>
 
+    <p>The simulation should take ~30 seconds and the membrane potential traces will be loaded and plotted automatically on completion.</p> 
+    
     <div class="tutorialForm center">
         <div class="tutorialLabel">Input current (pA)</div> <input id="iAmp" type="text" value="180"></input></br>
         <div class="tutorialLabel">Delay (ms)</div> <input id="iDel" type="text" value="700"></input></br>

NeuroML2/osbSessions/15.html

@@ -1,13 +1,30 @@
 <div>
 
-    <p><strong>Cloning an experiment</strong></p>
+    <p><strong>Changing the conductance densities</strong></p>
 
-    <p>The existing 2 experiments have been completed, and can't be run again, but can be cloned.</p>
+
+    <p>Change...</p> 
 
-    <p><i class="fa fa-exclamation-circle" aria-hidden="true" style="color:#dd0000"></i> 
-        To create a new experiment which can be executed on the OSB servers, select the clone experiment button 
-        (<i class="fa fa-clone" style="color:#ff5a02"></i>) on the right of the existing experiment on the 
-        <strong style="color:#ff5a02">Experiments</strong> tab.</p>
-		
+    <div class="tutorialForm center">
+        
+        
+        <div class="tutorialLabel">Transient Na<sup>+</sup> current on <strong>axon</strong> (S/cm2)</div> <input id="axonal_gNaTa_tbar_NaTa_t" type="text" value="3.429725"></input></br>
+        <div class="tutorialLabel">Persistent Na<sup>+</sup> current on <strong>axon</strong> (S/cm2)</div> <input id="axonal_gNap_Et2bar_Nap_Et2" type="text" value="0.009803"></input></br>
+        
+        
+        <div class="tutorialLabel">Input current (pA)</div> <input id="iAmp" type="text" value="180"></input></br>
+        <div class="tutorialLabel">Delay (ms)</div> <input id="iDel" type="text" value="700"></input></br>
+        <div class="tutorialLabel">Duration (ms)</div> <input id="iDur" type="text" value="2000"></input></br>
+        
+        <button class="btn" id="changeCurrent" onclick="quickExperiment('Conductance densities',
+            {
+                axonal_gNaTa_tbar_NaTa_t:{'neuroml.L23_cADpyr.biophys.membraneProperties.axonal_gNaTa_tbar_NaTa_t.condDensity':$('#axonal_gNaTa_tbar_NaTa_t').val()},
+                axonal_gNap_Et2bar_Nap_Et2:{'neuroml.L23_cADpyr.biophys.membraneProperties.axonal_gNap_Et2bar_Nap_Et2.condDensity':$('#axonal_gNap_Et2bar_Nap_Et2').val()},
+                iamp:{'Model.neuroml.L23_cADpyr.transient_pulse_current.amplitude':$('#iAmp').val()},
+                idel:{'Model.neuroml.L23_cADpyr.transient_pulse_current.delay':$('#iDel').val()},
+                idur:{'Model.neuroml.L23_cADpyr.transient_pulse_current.duration':$('#iDur').val()}
+            }
+        );"><i class="fa fa-exclamation-circle" aria-hidden="true" style="color:#dd0000"></i> Try it!</button><br/>
+</div>
 
 </div>

NeuroML2/osbSessions/15x.html

@@ -0,0 +1,13 @@
+<div>
+
+    <p><strong>Cloning an experiment</strong></p>
+    
+    <p>The existing 2 experiments have been completed, and can't be run again, but can be cloned.</p>
+    
+    <p><i class="fa fa-exclamation-circle" aria-hidden="true" style="color:#dd0000"></i> 
+        To create a new experiment which can be executed on the OSB servers, select the clone experiment button 
+        (<i class="fa fa-clone" style="color:#ff5a02"></i>) on the right of the existing experiment on the 
+        <strong style="color:#ff5a02">Experiments</strong> tab.</p>
+		
+    
+</div>

NeuroML2/osbSessions/3.html

@@ -13,9 +13,9 @@
         <strong style="color:#ff5a02">Highlight cell regions</strong> in the widget (link is under
         <strong>Click to apply colouring to the cell morphology</strong>). The cell should change color indicating the different regions:</p>
 
-    <p>&nbsp;> <strong><span style="color:#0066FF">soma</span></strong> - consisting of a set of flat segments recreating the shape of the pyramidal cell soma</strong><br/>
-    &nbsp;> <strong><span style="color:#99CC00">dendrites</span></strong> - the basal and apical dendrites</strong><br/>
-    &nbsp;> <strong><span style="color:#FF6600">axon</span></strong> - the short axon which has been added to the model in place of the reconstructed axon. </p>
+    <p>&nbsp;> <strong style="color:#0066FF">soma</strong> - consisting of a set of flat segments recreating the shape of the pyramidal cell soma</strong><br/>
+    &nbsp;> <strong style="color:#99CC00">dendrites</strong> - the basal and apical dendrites</strong><br/>
+    &nbsp;> <strong style="color:#FF6600">axon</strong> - the short axon which has been added to the model in place of the reconstructed axon. </p>
 
     <p><i class="fa fa-exclamation-circle" aria-hidden="true" style="color:#dd0000"></i> You may need to rotate/zoom in on the cell to see the axon 
         (use the mouse or the <i class="fa fa-search-plus" aria-hidden="true" style="color:#ff5a02"></i>, <i class="fa fa-repeat" aria-hidden="true" style="color:#ff5a02"></i>, etc. buttons on the left).</strong></p>

NeuroML2/osbSessions/l23_intro.json

@@ -74,6 +74,10 @@
             "title": "Running simulations",
             "content_url": "https://raw.githubusercontent.com/OpenSourceBrain/L23PyramidalCellTutorial/master/NeuroML2/osbSessions/14a.html",
             "action": ""
+        }, {
+            "title": "Running simulations",
+            "content_url": "https://raw.githubusercontent.com/OpenSourceBrain/L23PyramidalCellTutorial/master/NeuroML2/osbSessions/15.html",
+            "action": ""
         }, {
             "title": "End of the tutorial",
             "content_url": "https://raw.githubusercontent.com/OpenSourceBrain/L23PyramidalCellTutorial/master/NeuroML2/osbSessions/last.html",