compare nml and netpy

Author: HengyeZhu

NeuroML2/compare_MC/RE/20250822_164016_test_itre_caExt_NML.png

@@ -42,7 +42,9 @@
 simConfig.recordTraces = {'V_soma':{'sec':'soma','loc':0.5,'var':'v'}, 
                           'm_itre':{'sec': 'soma', 'loc': 0.5, 'mech': 'itre', 'var': 'm'},
                           'h_itre':{'sec': 'soma', 'loc': 0.5, 'mech': 'itre', 'var': 'h'},
-                          'ica_itre':{'sec': 'soma', 'loc': 0.5, 'mech': 'itre', 'var': 'i'}}  # Dict with traces to record
+                          'ica_itre':{'sec': 'soma', 'loc': 0.5, 'var': 'ica'},
+                          'carev_itre':{'sec': 'soma', 'loc': 0.5, 'mech': 'itre', 'var': 'carev'},
+                          'caConc_itre':{'sec': 'soma', 'loc': 0.5, 'var': 'cai'}}  # Dict with traces to record
 
 
 simConfig.recordStep = 0.01            # Step size in ms to save data (eg. V traces, LFP, etc)

NeuroML2/compare_MC/RE/20250822_164016_test_itre_ca_NML.png

@@ -40,7 +40,7 @@
         </membraneProperties>
 
         <intracellularProperties>
-            <species ion="ca" initialExtConcentration="2.0E-6 mol_per_cm3" concentrationModel="cadad_RE_soma" id="ca" initialConcentration="5.0E-5 mM"/>
+            <species ion="ca" initialExtConcentration="2.0 mM" concentrationModel="cadad_RE_soma" id="ca" initialConcentration="5.0E-5 mM"/>
             <resistivity value="100 ohm_cm"/>
         </intracellularProperties>
     </biophysicalProperties>