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lines changed Original file line number Diff line number Diff line change 11# Script for running automated tests on OSB, see https://github.com/OpenSourceBrain/osb-model-validation
2- # exclude a few that use new component types and are so not valid against the schema
3- target: "*.channel.nml"
2+ # - exclude a few that use new component types and are so not valid against the schema
3+ # - exclude new concentration models
4+ target: "ch_CavN.channel.nml; ch_KCaS.channel.nml; ch_Kdrfastngf.channel.nml; ch_KvAngf.channel.nml; ch_KvCaB.channel.nml; ch_Navngf.channel.nml; k*.channel.nml; hin.channel.nml; h_kole.channel.nml; h_migliore.channel.nml; I*channel.nml; i*channel.nml; n*channel.nml; N*channel.nml; p*channel.nml; t*channel.nml"
45engine: jNeuroML_validate
Original file line number Diff line number Diff line change 33 <notes > GHK!!!</notes >
44 <ionChannel id =" ch_CavL" conductance =" 10pS" type =" ionChannelHH" species =" ca" >
55 <ConductanceScalingCaDependent type =" ch_CavL_scale" />
6+
67 <gate id =" m" type =" gateHHrates" instances =" 2" >
78 <forwardRate type =" HHExpLinearRate" rate =" 156.9per_ms" scale =" 10mV" midpoint =" 81.5mV" />
89 <reverseRate type =" HHExpRate" rate =" 0.29per_ms" scale =" -10.86mV" midpoint =" 0mV" />
9- </gate >
10+ </gate >
1011
1112 </ionChannel >
1213
1314
1415 <ComponentType name =" ch_CavL_scale" extends =" baseConductanceScaling" >
15- <Requirement name =" caConc" dimension =" concentration" />
1616 <Constant name =" CONC_SCALE" dimension =" concentration" value =" 1 mM" />
1717 <Constant name =" ki" dimension =" none" value =" 0.001" />
18-
18+ <Requirement name =" caConc" dimension =" concentration" />
19+
1920 <Dynamics >
2021 <DerivedVariable name =" ca_conc" dimension =" none" value =" caConc / CONC_SCALE" />
2122 <DerivedVariable name =" factor" exposure =" factor" dimension =" none" value =" ki / (ki + ca_conc)" />
2223 </Dynamics >
2324
2425 </ComponentType >
2526
26- </neuroml >
27+ </neuroml >
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