More rerun scripts

Author: pgleeson

.gitignore

@@ -20,3 +20,4 @@ x86_64
 /ISN-nest-EI-0.gdf
 /pertinh.rate.*.dat
 /rates.png
+/exc2.rate.*.dat

runall_detailed.sh

@@ -0,0 +1,16 @@
+#!/bin/bash
+set -e
+# This script requires the repo https://github.com/OpenSourceBrain/SadehEtAl2017-InhibitionStabilizedNetworks 
+# to be present in the directory ../SadehEtAl2017-InhibitionStabilizedNetworks
+
+# This path is required for https://github.com/OpenSourceBrain/SadehEtAl2017-InhibitionStabilizedNetworks/blob/master/SpikingSimulationModels/defaultParams.py
+export PYTHONPATH=PYTHONPATH:../SadehEtAl2017-InhibitionStabilizedNetworks/SpikingSimulationModels
+
+for i in `seq 100 100 4000`;
+do
+    echo "==============================="
+    echo "Running with seed: "$i
+    python ISN.py -Detailed_Soma -perturbation -netpyne -seed:$i
+    python to_gdf.py -detailed
+    python3 ../SadehEtAl2017-InhibitionStabilizedNetworks/PyNN/analysis_perturbation_pynn.py .9 1000 -nogui -average -legend -detailed
+done 

runall_hypercurrent.sh

@@ -0,0 +1,16 @@
+#!/bin/bash
+set -e
+# This script requires the repo https://github.com/OpenSourceBrain/SadehEtAl2017-InhibitionStabilizedNetworks 
+# to be present in the directory ../SadehEtAl2017-InhibitionStabilizedNetworks
+
+# This path is required for https://github.com/OpenSourceBrain/SadehEtAl2017-InhibitionStabilizedNetworks/blob/master/SpikingSimulationModels/defaultParams.py
+export PYTHONPATH=PYTHONPATH:../SadehEtAl2017-InhibitionStabilizedNetworks/SpikingSimulationModels
+
+for i in `seq 100 100 4000`;
+do
+    echo "==============================="
+    echo "Running with seed: "$i
+    python ISN.py -AllenCells -hyperA -netpyne -seed:$i
+    python to_gdf.py
+    python3 ../SadehEtAl2017-InhibitionStabilizedNetworks/PyNN/analysis_perturbation_pynn.py .9 1000 -nogui -average -legend
+done