Merge pull request #120 from OpenSourceBrain/test_gha

Tests OMV install & core functionality across multiple Py versions & linux/mac; to v0.2.20

Author: pgleeson

.github/workflows/ci_versions.yml

@@ -0,0 +1,53 @@
+name: Test across versions
+
+on:
+  push:
+    branches: [ master, development, experimental, test* ]
+  pull_request:
+    branches: [ master, development, experimental, test* ]
+
+jobs:
+  build:
+
+    runs-on: ${{ matrix.runs-on }}
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        runs-on: [ubuntu-latest, macos-latest, macos-14]
+        exclude:
+          - runs-on: macos-14
+            python-version: "3.9"
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+
+    - name: Install HDF5 for pytables on macos-14
+      run: |
+        # if [[  ${{ matrix.python-version }} == "3.11" ]] || [[  ${{ matrix.python-version }} == "3.12" ]]; then 
+        if [[  ${{ matrix.runs-on }} == "macos-14" ]]; then brew install hdf5 ; fi;
+        #fi;
+
+
+    - name: Install OMV
+      run: |
+        pip install .
+        pip list
+
+    - name: Run simple OMV tests
+      run: |
+        omv install pyNeuroML
+        omv test -V utilities/tests/.test.ex9.jnmlbrian2.omt
+
+
+    - name: OMV final version info
+      run: |
+        omv list -V # list installed engines
+        env
+        pip list

.github/workflows/python-publish.yml

@@ -13,7 +13,7 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: "3.x"
     - name: Install pypa/build
@@ -25,7 +25,7 @@ jobs:
     - name: Build a binary wheel and a source tarball
       run: python3 -m build
     - name: Store the distribution packages
-      uses: actions/upload-artifact@v3
+      uses: actions/upload-artifact@v4
       with:
         name: python-package-distributions
         path: dist/
@@ -43,7 +43,7 @@ jobs:
       id-token: write
     steps:
     - name: Download all the dists
-      uses: actions/download-artifact@v3
+      uses: actions/download-artifact@v4
       with:
         name: python-package-distributions
         path: dist/

omv/engines/jneuroml.py

@@ -81,6 +81,10 @@ def install(version):
         inform("Will fetch and install jNeuroML jar", indent=2)
         install_jnml(version)
 
+        if not JNeuroMLEngine.is_installed():
+            inform("Failure to install, exiting", indent=1)
+            exit(1)
+
     def run(self):
         try:
             inform(

omv/engines/pyneuroml_.py

@@ -38,6 +38,11 @@ def install(version):
         inform("Will fetch and install the latest pyNeuroML", indent=2)
         install_pynml(version)
 
+        if not PyNeuroMLEngine.is_installed():
+            inform("Failure to install, exiting", indent=1)
+            exit(1)
+
+
     def run(self):
         try:
             inform(

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = OSBModelValidation
-version = 0.2.19
+version = 0.2.20
 author = Boris Marin, Padraig Gleeson
 author_email = [email protected]
 url = https://github.com/OpenSourceBrain/osb-model-validation
@@ -28,6 +28,7 @@ install_requires =
     pathlib; python_version<'3.4'
     docopt
     importlib-metadata; python_version<'3.8'
+    setuptools
 
 packages = find: