chore(bump): 3.21.0-alpha.3 (#6618)

Author: mcous

.eslintignore

@@ -19,6 +19,8 @@ discovery-client/lib/**
 **/package.json
 **/CHANGELOG.md
 lerna.json
+!api/release-notes.md
+!app-shell/build/release-notes.md
 
 # mypy
 **/.mypy_cache/**

CHANGELOG.md

@@ -1,13 +1,37 @@
-# Robot OS Changes from 3.20.1 to 3.21.0 Beta 0
+# Robot OS Changes from 3.20.1 to 3.21.0
 
-This is a beta release of the OT-2 software and should not be used for general scientific tasks.
+For more details about this release, please see the full [technical change
+log][]. For a list of currently known issues, please see the [Opentrons issue tracker][].
 
-## Features
-- Better support for testing the robot calibration overhaul. This beta release should not be used for normal protocol execution.
+[technical change log]: https://github.com/Opentrons/opentrons/blob/edge/CHANGELOG.md
+[opentrons issue tracker]: https://github.com/Opentrons/opentrons/issues?q=is%3Aopen+is%3Aissue+label%3Abug
 
+## Fixes
 
+- Prevent HardLimitErrors when jogging during labware calibration
+  - The robot will now refuse to execute jog commands if it thinks doing so will cause it to hit an axis limit
+- Do not overwrite custom flow rates when new pipettes are loaded
+  - Previously, in Python protocols, loading a second pipette would cause any custom settings of the first pipette to be overwritten
+- Better handling of set temperature commands for thermocyclers
+  - A race condition in the driver code could cause consecutive set temperature commands to a thermocycler to fail
+- Prevent extra pipette movement after homing
+- Add missing documentation for "unloading" labware from a slot in Python protocols
+  - Thanks to Theo Sanderson for their contributions in [PR 6260][]!
 
-For more details about this release, please see the full [technical change
-log][changelog]
+[pr 6260]: https://github.com/Opentrons/opentrons/pull/6260
+
+## Features
+
+- Check if an instrument has a tip through the Python Protocol API
+  - Using `apiLevel: '2.7'` in your Python protocol will allow you to access the new `has_tip` property of a given pipette
+- Allow the Opentrons App to get and set the OT-2's clock
+  - If your OT-2 is not connected to the internet, it can have trouble getting the correct time for its internal clock
+  - The Opentrons App can now set your OT-2's time, which should prevent miscommunication when the App and OT-2 are talking
+- New packages and libraries for the OT-2's embedded Linux environment
+  - `curl`, `wget`, and `git` to retrieve content for complex workflows
+  - `grep` and `sl` because no command-line environment is complete without them
+  - `screen` and `tmux` for all your persistent session and terminal multiplexing needs
+  - Python bindings for `curses` so you can write your own curses
+  - Thanks to Theo Sanderson for their contributions in [PR 102][]!
 
-[changelog]: https://github.com/Opentrons/opentrons/blob/edge/CHANGELOG.md
+[pr 102]: https://github.com/Opentrons/buildroot/pull/102

api/release-notes.md

@@ -3,14 +3,16 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
-# [3.21.0-beta.0](https://github.com/Opentrons/opentrons/compare/v3.20.1...v3.21.0-beta.0) (2020-09-11)
+# [3.21.0-alpha.3](https://github.com/Opentrons/opentrons/compare/v3.20.1...v3.21.0-alpha.3) (2020-09-23)
+
 
 ### Bug Fixes
 
 * **api:** can't inhibit creating Session in build_and_prep if http protocol sessions are enabled because.... THATS HOW PROTOCOL SESSIONS RUN PROTOCOLS ([#6345](https://github.com/Opentrons/opentrons/issues/6345)) ([b49c2a1](https://github.com/Opentrons/opentrons/commit/b49c2a1))
 * **api:** Document deck slot deletion ([#6260](https://github.com/Opentrons/opentrons/issues/6260)) ([b37e23a](https://github.com/Opentrons/opentrons/commit/b37e23a)), closes [#6214](https://github.com/Opentrons/opentrons/issues/6214)
 * **api:** fix Deck.get_slot_center z value ([#6435](https://github.com/Opentrons/opentrons/issues/6435)) ([ddc8965](https://github.com/Opentrons/opentrons/commit/ddc8965))
 * **api:** fix InstrumentContext.home_plunger ([#6367](https://github.com/Opentrons/opentrons/issues/6367)) ([120d68a](https://github.com/Opentrons/opentrons/commit/120d68a))
+* **api:** limit calibration jogs when going upward ([#6565](https://github.com/Opentrons/opentrons/issues/6565)) ([5a82384](https://github.com/Opentrons/opentrons/commit/5a82384)), closes [#6562](https://github.com/Opentrons/opentrons/issues/6562)
 * **api:** Prevent extra pipette movement after homing ([#6364](https://github.com/Opentrons/opentrons/issues/6364)) ([1ea97c7](https://github.com/Opentrons/opentrons/commit/1ea97c7))
 * **api:** thermocycler hold_time bug ([#6479](https://github.com/Opentrons/opentrons/issues/6479)) ([b9d6498](https://github.com/Opentrons/opentrons/commit/b9d6498))
 * **api:** typo in should_dodge_thermocycler ([#6458](https://github.com/Opentrons/opentrons/issues/6458)) ([8e446e1](https://github.com/Opentrons/opentrons/commit/8e446e1))
@@ -19,12 +21,15 @@ See [Conventional Commits](https://conventionalcommits.org) for commit guideline
 
 ### Features
 
+* **api:** Add all tip handling and tracking functions for the paired instrument context ([#6550](https://github.com/Opentrons/opentrons/issues/6550)) ([d9cf00e](https://github.com/Opentrons/opentrons/commit/d9cf00e))
+* **api:** Add pipette pairing to the command log and support in rpc ([#6577](https://github.com/Opentrons/opentrons/issues/6577)) ([75a7545](https://github.com/Opentrons/opentrons/commit/75a7545))
 * **api:** Add skeleton Pipette pairing context ([#6472](https://github.com/Opentrons/opentrons/issues/6472)) ([eb030d1](https://github.com/Opentrons/opentrons/commit/eb030d1))
 * **api:** adding deep_get utility function ([#6338](https://github.com/Opentrons/opentrons/issues/6338)) ([f83dc3e](https://github.com/Opentrons/opentrons/commit/f83dc3e))
 * **api:** Allow pipette pairing for aspirate and dispense functions ([#6450](https://github.com/Opentrons/opentrons/issues/6450)) ([f1cbe81](https://github.com/Opentrons/opentrons/commit/f1cbe81))
 * **api:** Lay foundation on the backend to support simultaneous axis movement ([#6373](https://github.com/Opentrons/opentrons/issues/6373)) ([82e5edf](https://github.com/Opentrons/opentrons/commit/82e5edf))
 * **api:** Save new robot calibration in a separate location ([#6281](https://github.com/Opentrons/opentrons/issues/6281)) ([03c3051](https://github.com/Opentrons/opentrons/commit/03c3051))
 * **api:** Support pipette pairing for pickup and drop tip ([#6390](https://github.com/Opentrons/opentrons/issues/6390)) ([a3d4d12](https://github.com/Opentrons/opentrons/commit/a3d4d12))
+* **api, robot-server:** expose pipette offset cal via http ([#6563](https://github.com/Opentrons/opentrons/issues/6563)) ([ffd3439](https://github.com/Opentrons/opentrons/commit/ffd3439)), closes [#6429](https://github.com/Opentrons/opentrons/issues/6429)
 * **api,robot-server:** Robot server rpc http ff ([#6310](https://github.com/Opentrons/opentrons/issues/6310)) ([ba0fc92](https://github.com/Opentrons/opentrons/commit/ba0fc92)), closes [#6305](https://github.com/Opentrons/opentrons/issues/6305)
 
 

api/src/opentrons/CHANGELOG.md

@@ -1,6 +1,6 @@
 {
   "name": "@opentrons/api-server",
-  "version": "3.21.0-beta.0",
+  "version": "3.21.0-alpha.3",
   "description": "Opentrons API server application",
   "repository": {
     "type": "git",

api/src/opentrons/package.json

@@ -3,10 +3,12 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
-# [3.21.0-beta.0](https://github.com/Opentrons/opentrons/compare/v3.20.1...v3.21.0-beta.0) (2020-09-11)
+# [3.21.0-alpha.3](https://github.com/Opentrons/opentrons/compare/v3.20.1...v3.21.0-alpha.3) (2020-09-23)
+
 
 ### Bug Fixes
 
+* **app:** cache robot releases manifest for offline usage ([#6494](https://github.com/Opentrons/opentrons/issues/6494)) ([5308562](https://github.com/Opentrons/opentrons/commit/5308562)), closes [#5992](https://github.com/Opentrons/opentrons/issues/5992)
 * **app:** do not set the user's Intercom name to "Unknown User" ([#6468](https://github.com/Opentrons/opentrons/issues/6468)) ([66662a4](https://github.com/Opentrons/opentrons/commit/66662a4)), closes [#6461](https://github.com/Opentrons/opentrons/issues/6461)
 * **app, app-shell:** use mtime for custom labware date display ([#6396](https://github.com/Opentrons/opentrons/issues/6396)) ([45f7ec8](https://github.com/Opentrons/opentrons/commit/45f7ec8)), closes [#6381](https://github.com/Opentrons/opentrons/issues/6381)
 

app-shell/CHANGELOG.md

@@ -1,14 +1,27 @@
-# Opentrons App Changes from 3.20.1 to 3.21.0 Beta 0
+# Opentrons App Changes from 3.20.0 to 3.20.1
 
-This is a beta release of 3.20.1, and should not be used for general scientific tasks.
+For more details about this release, please see the full [technical change
+log][]. For a list of currently known issues, please see the [Opentrons issue tracker][].
 
-## Features
-- Better support for the Robot Calibration Overhaul.
-- There is now a button to open a connected OT-2's Jupyter terminal in your browser.
+[technical change log]: https://github.com/Opentrons/opentrons/blob/edge/CHANGELOG.md
+[opentrons issue tracker]: https://github.com/Opentrons/opentrons/issues?q=is%3Aopen+is%3Aissue+label%3Abug
 
-For more details about this release, please see the full [technical change
-log][changelog]
+## Fixes
 
-[changelog]: https://github.com/Opentrons/opentrons/blob/edge/CHANGELOG.md
+- Properly enable / disable the "Update robot software from file" button
+  - This button was sometimes enabled and disabled at improper times
+  - That logic has been fixed and a tooltip has been added whenever it is disabled
+- Better support for updating your OT-2's software while offline
+  - The Opentrons App will now save the latest robot software update in a cache
+  - Once the App has downloaded the robot update once, you will be able to tell the App to update an OT-2 even if your computer doesn't have internet at the time
+- Remove an errant "Exit" button on the last page of the Deck Calibration Check wizard
+- Ensure modules render correctly in the deck map when loaded in slot 3, 6, or 9
+- Ensure "Last Updated" times for custom labware are correct
 
+## Features
 
+- Automatically sync the OT-2's clock with the App on connect
+  - When the App connects to an OT-2 running v3.21.0, it will sync the OT-2's clock with your computer's clock
+  - This should fix issues with incorrectly displayed protocol run times
+- Open Jupyter Notebook directly from to the Robot's page in the App
+  - The Opentrons App now has a button in a given robot's "Advanced Settings" section to open that OT-2's Jupyter Notebook in your computer's browser

app-shell/build/release-notes.md

@@ -2,7 +2,7 @@
   "name": "@opentrons/app-shell",
   "private": true,
   "productName": "Opentrons",
-  "version": "3.21.0-beta.0",
+  "version": "3.21.0-alpha.3",
   "description": "Opentrons desktop application",
   "main": "lib/main.js",
   "scripts": {
@@ -27,9 +27,9 @@
     ]
   },
   "devDependencies": {
-    "@opentrons/app": "3.21.0-beta.0",
-    "@opentrons/discovery-client": "3.21.0-beta.0",
-    "@opentrons/shared-data": "3.21.0-beta.0"
+    "@opentrons/app": "3.21.0-alpha.3",
+    "@opentrons/discovery-client": "3.21.0-alpha.3",
+    "@opentrons/shared-data": "3.21.0-alpha.3"
   },
   "dependencies": {
     "@thi.ng/paths": "1.6.5",

app-shell/package.json

@@ -3,21 +3,27 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
-# [3.21.0-beta.0](https://github.com/Opentrons/opentrons/compare/v3.20.1...v3.21.0-beta.0) (2020-09-11)
+# [3.21.0-alpha.3](https://github.com/Opentrons/opentrons/compare/v3.20.1...v3.21.0-alpha.3) (2020-09-23)
+
 
 ### Bug Fixes
 
-* **app:** temporary fix for chained command race conditions in cal flows to unblock user testing ([#6530](https://github.com/Opentrons/opentrons/issues/6530)) ([3c17d9e](https://github.com/Opentrons/opentrons/commit/3c17d9e))
 * **app:** do not set the user's Intercom name to "Unknown User" ([#6468](https://github.com/Opentrons/opentrons/issues/6468)) ([66662a4](https://github.com/Opentrons/opentrons/commit/66662a4)), closes [#6461](https://github.com/Opentrons/opentrons/issues/6461)
+* **app:** Ensure cal check exit button on the title modal only displays if there is no primary exit ([#6616](https://github.com/Opentrons/opentrons/issues/6616)) ([88bb0a8](https://github.com/Opentrons/opentrons/commit/88bb0a8))
 * **app:** fix layout of calibration panel complete confirmation button ([#6509](https://github.com/Opentrons/opentrons/issues/6509)) ([093bddb](https://github.com/Opentrons/opentrons/commit/093bddb))
 * **app:** flip modules on deck map when in slots 3, 6, or 9 ([#6383](https://github.com/Opentrons/opentrons/issues/6383)) ([d0347da](https://github.com/Opentrons/opentrons/commit/d0347da)), closes [#4422](https://github.com/Opentrons/opentrons/issues/4422)
+* **app:** make cal commands chain instead of race ([#6561](https://github.com/Opentrons/opentrons/issues/6561)) ([20f01bc](https://github.com/Opentrons/opentrons/commit/20f01bc)), closes [#6535](https://github.com/Opentrons/opentrons/issues/6535)
 * **app:** make tip length calibration use generic calibration move to tiprack command ([#6489](https://github.com/Opentrons/opentrons/issues/6489)) ([b5a59e0](https://github.com/Opentrons/opentrons/commit/b5a59e0))
+* **app:** properly enable/disable robot update from file button ([#6483](https://github.com/Opentrons/opentrons/issues/6483)) ([a996cdc](https://github.com/Opentrons/opentrons/commit/a996cdc)), closes [#5429](https://github.com/Opentrons/opentrons/issues/5429)
+* **app:** sync robot time with app time on connect ([#6501](https://github.com/Opentrons/opentrons/issues/6501)) ([66dc626](https://github.com/Opentrons/opentrons/commit/66dc626)), closes [#3872](https://github.com/Opentrons/opentrons/issues/3872)
+* **app:** temporary fix for chained command race conditions in cal flows to unblock user testing ([#6530](https://github.com/Opentrons/opentrons/issues/6530)) ([3c17d9e](https://github.com/Opentrons/opentrons/commit/3c17d9e))
 * **app, app-shell:** use mtime for custom labware date display ([#6396](https://github.com/Opentrons/opentrons/issues/6396)) ([45f7ec8](https://github.com/Opentrons/opentrons/commit/45f7ec8)), closes [#6381](https://github.com/Opentrons/opentrons/issues/6381)
 
 
 ### Features
 
 * **app:** add Jupyter Notebook button to robot's Advanced Settings ([#6474](https://github.com/Opentrons/opentrons/issues/6474)) ([d615d2d](https://github.com/Opentrons/opentrons/commit/d615d2d)), closes [#6102](https://github.com/Opentrons/opentrons/issues/6102)
+* **app:** rename base -> block for TC copy ([#6524](https://github.com/Opentrons/opentrons/issues/6524)) ([abd6b65](https://github.com/Opentrons/opentrons/commit/abd6b65)), closes [#6086](https://github.com/Opentrons/opentrons/issues/6086)
 * **robot-server,app:** add download deck calibration button ([#6453](https://github.com/Opentrons/opentrons/issues/6453)) ([b3b365d](https://github.com/Opentrons/opentrons/commit/b3b365d)), closes [#6055](https://github.com/Opentrons/opentrons/issues/6055)
 
 

app/CHANGELOG.md

@@ -1,6 +1,6 @@
 {
   "name": "@opentrons/app",
-  "version": "3.21.0-beta.0",
+  "version": "3.21.0-alpha.3",
   "description": "Opentrons desktop application UI",
   "main": "src/index.js",
   "repository": {
@@ -18,8 +18,8 @@
   "homepage": "https://github.com/Opentrons/opentrons",
   "dependencies": {
     "@hot-loader/react-dom": "16.8.6",
-    "@opentrons/components": "3.21.0-beta.0",
-    "@opentrons/shared-data": "3.21.0-beta.0",
+    "@opentrons/components": "3.21.0-alpha.3",
+    "@opentrons/shared-data": "3.21.0-alpha.3",
     "@thi.ng/paths": "1.6.5",
     "classnames": "2.2.5",
     "connected-react-router": "6.8.0",