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upload burnning rock
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‎oem_projects/burning_rock/Pipfile

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[[source]]
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url = "https://pypi.org/simple"
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verify_ssl = true
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name = "pypi"
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[packages]
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[dev-packages]
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[requires]
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python_version = "3.7"

‎oem_projects/burning_rock/README.md

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# OT2R-API
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## About
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1. App Version: 6.3.1
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2. Robot Server: 6.3.1
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3. ThisVersion: 1.2.0
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## News-1.2.0
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1. updata HTTP API
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- get : /robot/door/status
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get the door status
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- get: /version
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get the release version
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2. update the demo for PCR part (./examples/tc_load_slot8.py)
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- load lab-ware on slot8
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- run profile
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3. update door_stauts demo (./examples/door_status.py)
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- get door status by HTTP API
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4. update aspirate and dispense method
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- add arguments, include leading_air_gap and lagged_air_gap in aspirate and dispense method
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- call these methods in ./examples/transfer_liquid.py
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5. protocol_context.py
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- return_tip()
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- mix_liquid()
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## News-1.1.0
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1. update a string of calibration HTTP API, include:
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- deck calibration
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- tip length calibration
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- pipette offset calibration
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- labware calibration
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2. add load custom labware HTTP API, and demo file
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3. add transfer liquid demo test by load custom labware
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## API Document
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[api-document](127.0.0.1/ot2-openapi_api_project.html)
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## Hardware API Description
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directory -> (./hardware_control)
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1. home - done
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2. move_to - done
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3. move_rel - done
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4. require_useful_pos - done
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5. identify_robot - done
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## Protocol API Description
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directory -> (./protocol)
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1. require_saved_pos - done
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2. move_to - done
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3. move_rel - done
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4. move_to_slot - fail
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5. move_to_well - done
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6. require_last_run_status - done
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7. require_all_runs - done
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8. delete_run_by_id - done
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9. clear_runs - done
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10. wait_for_protocol_stop - done
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11. home - done
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12. run_protocol - done
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13. stop_protocol - done
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14. pause_protocol - done
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15. drop - done
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16. pick_up - done
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17. load_liquid - done
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18. load_pipette - done
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19. load_labware - done
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20. build-context - done
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21. get_commands - done
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22. blow_out - done
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23. aspirate - done
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24. dispense - done
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25. touch_tip - debug
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## System API Description
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1. get_network_status - done
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2. get_wifi_list - done
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3. set_configure_wifi -done
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4. get_wifi_keys - done
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5. set_wifi_keys - done
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6. set_delete_wifi_key -done
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7. set_disconnect_wifi - done
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8. set_ot2_blink_gantry_lights -done
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9. get_robot_lights -done
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10. set_robot_lights -done
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11. get_settings -done
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12. set_settings -done
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13. set_log_level - done
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14. set_log_level_upstream - done
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15. get_settings_reset - done
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16. get_robot_settings -done
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17. get_pipette_settings - done
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18. get_pipette_setting_by_id -done
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19. patch_pipette_setting_by_id - done
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20. get_calibration_status - done
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21. set_execute_module_command -done
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22. get_system_health - done
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23. get_pipettes_currently_attached - done
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24. get_engaged_motors - done
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25. set_disengage_motors - done
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26. set_capture_an_image - done
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27. get_logs - done
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## Modules/Heatershaker API Description
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1. open_labware_latch - done
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2. close_labware_latch - done
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3. set_target_temperature - done
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4. wait_for_temperature - done
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5. get_target_temperature - done
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6. get_target_speed - done
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7. get_latch_status - done
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8. deactivate_shaker - done
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9. deactivate_heater - done
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10. set_wait_shaker_speed - done
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## Modules/Magnetic API Description
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1. engage_magnetic - done
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2. disengage - done
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## Modules/TemperatureModule API Description
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1. wait_for_temperature - done
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2. get_target_temperature - done
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3. set_temperature - done
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4. deactivate - done
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## Modules/Thermocycler
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1. run_profile - fail
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2. open_lid - done
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3. close_lid - done
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4. set_lid_temperature - done
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5. wait_for_lid_temperature - done
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6. deactivate_lid - done
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7. deactivate_block -done
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8. wait_for_block_temperature - done
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9. get_block_temperature - done
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10. get_lid_temperature - done
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11. get_lid_status - done
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12. set_block_temperature - done
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## QuickStart
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```tex
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请参考我们的一些示例: ./examples
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进行一些移液，模块控制，和运动控制的基本操作。
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- By合创生物
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```
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## TODO
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1. calibration_flow
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校准deck, tiplength, pipette offset
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2. load_protocol_flow
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load a protocol, analyze, and run
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## 调用 HTTP 方法
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```python
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from http_client import HttpClient
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ret = HttpClient.get("/health") # get 方法
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ret = HttpClient.post("/robot/lights", data={"on": False}) # post 方法
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# ret 返回元组，ret[0] = state_code: int, ret[1] = respons: dict
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```
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## Opentrons branch tracker
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```context
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https://github.com/Opentrons/opentrons/tree/firerock-stable-6.3.1
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```
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## Opentrons image tracker
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```context
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https://builds.opentrons.com/ot2-br/7722243621/ot2-fullimage.zip
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```
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‎oem_projects/burning_rock/__init__.py

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‎oem_projects/burning_rock/examples/__init__.py

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‎oem_projects/burning_rock/examples/calibration.py

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from solutions.calibration_flow import CalibrationFlow
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import asyncio
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from ot_type import Mount
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async def _main():
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c_f = CalibrationFlow()
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# exit all
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await c_f.excuse_exit_calibration(_all=True)
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# deck calibration
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_input = input("do deck calibration ? (y/n)")
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if _input == 'y':
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await c_f.deck_calibration()
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# tip length calibration & pipette offset
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for mount in [Mount.LEFT, Mount.RIGHT]:
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_input = input(f"do tip length - {mount.value} calibration ? (y/n)")
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if _input == 'y':
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await c_f.tip_length_calibration(mount)
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_input = input(f"do pipette offset - {mount.value} calibration ? (y/n)")
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if _input == 'y':
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await c_f.pipette_offset_calibration(mount)
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if __name__ == '__main__':
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asyncio.run(_main())

‎oem_projects/burning_rock/examples/door_status.py

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from http_client import HttpClient
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def get_door_status():
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"""
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get door status
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:return:
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"""
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ret = HttpClient.get("/robot/door/status")
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HttpClient.judge_state_code(ret)
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data = ret[1]
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if data["door_status"] is False:
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return "Opened"
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else:
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return "Closed"
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if __name__ == '__main__':
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ret = get_door_status()
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print(ret)

‎oem_projects/burning_rock/examples/heatershaker_control.py

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import time
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from modules.heatershaker import HeaterShakerModule
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from ot_type import ModuleName
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import asyncio
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async def _main():
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_shaker_module = HeaterShakerModule()
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shaker_v2 = await _shaker_module.get_module_id_by_name(ModuleName.HEATER_SHAKER_MODULE_V1)
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this_module_id = shaker_v2[0]
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await _shaker_module.set_target_temperature(this_module_id, 50)
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await _shaker_module.wait_for_temperature(this_module_id)
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await _shaker_module.set_wait_shaker_speed(this_module_id, 1000)
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temp = await _shaker_module.get_target_temperature(this_module_id)
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speed = await _shaker_module.get_target_speed(this_module_id)
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print(f"Temp: {temp}")
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print(f"Speed: {speed}")
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await _shaker_module.deactivate_shaker(this_module_id)
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await _shaker_module.deactivate_heater(this_module_id)
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await _shaker_module.open_labware_latch(this_module_id)
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status = await _shaker_module.get_latch_status(this_module_id)
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print(f"Latch Status: {status}")
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await _shaker_module.close_labware_latch(this_module_id)
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status = await _shaker_module.get_latch_status(this_module_id)
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print(f"Latch Status: {status}")
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if __name__ == '__main__':
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asyncio.run(_main())

‎oem_projects/burning_rock/examples/magnetic_control.py

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from modules.magnetic import MagneticModule
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from ot_type import ModuleName
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import asyncio
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async def _main():
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_magnetic = MagneticModule()
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mag_v2 = await _magnetic.get_module_id_by_name(ModuleName.MAGNETIC_MODULE_V2)
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height = await _magnetic.engage_magnetic(mag_v2[0], 20)
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print("Height: ", height)
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await _magnetic.disengage(mag_v2[0])
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if __name__ == '__main__':
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asyncio.run(_main())

‎oem_projects/burning_rock/examples/move.py

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"""
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move opentrons flex with protocol
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"""
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from protocol.protocol_context import ProtocolContext
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from ot_type import Instrument, LabWare, Mount, Point, Axis
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import asyncio
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import time
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async def _main():
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api = ProtocolContext()
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mount = Mount.LEFT
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await api.build_context(clear=True)
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await api.home()
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# load
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pipette_p300_s = await api.load_pipette(Instrument.PIPETTE_P20_SIGNAL_GEN2, mount)
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tip_20ul = await api.load_labware(LabWare.OPENTRONS_96_TIPRACK_20UL, slot_name="2")
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pipette_p300_s = pipette_p300_s.pipette_id
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tip_20ul = tip_20ul.labware_id
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# excuse
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home_pos = await api.require_saved_pos(pipette_p300_s)
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print(f"Home Position: {home_pos}")
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# move to well
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# await api.move_to_well(pipette_p300_s, tip_20ul, well='A2', offset={"x": 0, "y": 0, "z": 20})
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# move to
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await api.move_to(pipette_p300_s, position=Point(100, 100, 100))
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# move relative
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await api.move_rel(pipette_p300_s, Axis.X, 50)
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time.sleep(0.5)
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await api.move_rel(pipette_p300_s, Axis.Y, 50)
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time.sleep(0.5)
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rel_pos = await api.move_rel(pipette_p300_s, Axis.Z, -50)
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print(f"Current Position: {rel_pos}")
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# home
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await api.run_protocol()
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if __name__ == '__main__':
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input("clean deck for move...")
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asyncio.run(_main())

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