Merge pull request #21 from Quarkins/master

Stranded two contig bug

Author: Quarkins

BuildSuperTranscript.py

@@ -233,7 +233,7 @@ def BuildGraph(fname,transcripts,verbose=False):
 	#Filter psl table where two transcripts can have multiple rows (usually because blat does T1 vs T2 then T2 vs T1 later)
 	bData, trandir = filt_dir(bData)
 
-	if(len(bData['strand'].unique()) > 1): #That is we have both pos and neg strands
+	if(len(bData['strand'].unique()) > 1 or bData['strand'].unique() == '-'): #That is we have both pos and neg strands or potentially two transcripts with a negative strand
 		print("Double Stranded Contigs\n")
 
 		#Re-correct the transcripts to be the reverse compliments if one of the transcripts has a negative directionality

Lace.py

@@ -165,6 +165,15 @@ def Split(genome,corsetfile,ncore,maxTran,outdir):
 
 
 if __name__ == '__main__':
+	
+	#Print Lace Version
+	print(" __      __    ____  ____ ")
+	print("(  )    / _\  /    )(  __)")
+	print("/  (_/\/    \(  (__  ) _) ")
+	print("\_____/\_/\_/\_____)(____)")
+	print("Lace Version: 0.80")
+	print("Last Editted: 07/11/16")
+	
 
 	#Make argument parser
 	parser = argparse.ArgumentParser()