Build site.

Author: JovMaksimovic

docs/index.html

@@ -302,7 +302,7 @@ <h1 class="title toc-ignore">Home</h1>
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-<strong>Last updated:</strong> 2021-04-13
+<strong>Last updated:</strong> 2021-05-21
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 <strong>Checks:</strong> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> 2 <span class="glyphicon glyphicon-exclamation-sign text-danger" aria-hidden="true"></span> 0
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-<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsatlassianpetermacorgaubitbucketscmosmethylgenesettestingtree62fdddc3d48739e5e8f80a02b8ecef78a9b0c456targetblank62fdddca"> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> <strong>Repository version:</strong> <a href="https://atlassian.petermac.org.au/bitbucket/scm/os/methyl-geneset-testing/tree/62fdddc3d48739e5e8f80a02b8ecef78a9b0c456" target="_blank">62fdddc</a> </a>
+<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsatlassianpetermacorgaubitbucketscmosmethylgenesettestingtreeae9d8f7bcf6675246b3afb0c57e906b1b9e27ec1targetblankae9d8f7a"> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> <strong>Repository version:</strong> <a href="https://atlassian.petermac.org.au/bitbucket/scm/os/methyl-geneset-testing/tree/ae9d8f7bcf6675246b3afb0c57e906b1b9e27ec1" target="_blank">ae9d8f7</a> </a>
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-<div id="strongRepositoryversionstrongahrefhttpsatlassianpetermacorgaubitbucketscmosmethylgenesettestingtree62fdddc3d48739e5e8f80a02b8ecef78a9b0c456targetblank62fdddca" class="panel-collapse collapse">
+<div id="strongRepositoryversionstrongahrefhttpsatlassianpetermacorgaubitbucketscmosmethylgenesettestingtreeae9d8f7bcf6675246b3afb0c57e906b1b9e27ec1targetblankae9d8f7a" class="panel-collapse collapse">
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 Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
 </p>
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-The results in this page were generated with repository version <a href="https://atlassian.petermac.org.au/bitbucket/scm/os/methyl-geneset-testing/tree/62fdddc3d48739e5e8f80a02b8ecef78a9b0c456" target="_blank">62fdddc</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
+The results in this page were generated with repository version <a href="https://atlassian.petermac.org.au/bitbucket/scm/os/methyl-geneset-testing/tree/ae9d8f7bcf6675246b3afb0c57e906b1b9e27ec1" target="_blank">ae9d8f7</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
 </p>
 <p>
 Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use <code>wflow_publish</code> or <code>wflow_git_commit</code>). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
@@ -393,14 +393,15 @@ <h1 class="title toc-ignore">Home</h1>
     Ignored:    data/datasets/TCGA.BRCA.rds
     Ignored:    data/datasets/TCGA.KIRC.rds
     Ignored:    data/misc/
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     Ignored:    output/.DS_Store
     Ignored:    output/FDR-analysis/
     Ignored:    output/compare-methods/
     Ignored:    output/figures/
     Ignored:    output/methylgsa-params/
+    Ignored:    output/outputs-1.tar.gz
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-    Ignored:    output/test/
 
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     Untracked:  analysis/old/
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+<a href="https://atlassian.petermac.org.au/bitbucket/scm/os/methyl-geneset-testing/blob/ae9d8f7bcf6675246b3afb0c57e906b1b9e27ec1/analysis/index.Rmd" target="_blank">ae9d8f7</a>
+</td>
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+JovMaksimovic
+</td>
+<td>
+2021-05-21
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+wflow_publish(&quot;analysis/index.Rmd&quot;)
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+html
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+<a href="https://atlassian.petermac.org.au/bitbucket/scm/os/methyl-geneset-testing/blob/4c57176ec3664b1804f67dfc771a928a291d4f46/docs/index.html" target="_blank">4c57176</a>
+</td>
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+JovMaksimovic
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+<td>
+2021-04-13
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+Build site.
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+Rmd
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 <a href="https://atlassian.petermac.org.au/bitbucket/scm/os/methyl-geneset-testing/blob/62fdddc3d48739e5e8f80a02b8ecef78a9b0c456/analysis/index.Rmd" target="_blank">62fdddc</a>
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@@ -1527,12 +1562,12 @@ <h2>Analysis</h2>
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 <div id="licenses" class="section level2">
 <h2>Licenses</h2>
-<p>The code in this analysis is covered by the <a href="https://choosealicense.com/licenses/mit/" title="MIT License">MIT license</a> and the written content on this website is covered by a <a href="https://creativecommons.org/licenses/by/4.0/" title="CC-BY License">Creative Commons CC-BY</a> license.</p>
+<p>The code in this analysis is covered by the <a href="https://choosealicense.com/licenses/mit/" title="MIT License">MIT license</a> and the written content on this website is covered by a <a href="https://choosealicense.com/licenses/cc-by-4.0/" title="CC-BY License">Creative Commons CC-BY</a> license.</p>
 </div>
 <div id="citations" class="section level2">
 <h2>Citations</h2>
 <blockquote>
-<p>Maksimovic J, Oshlack O, Phipson B. Gene set enrichment analysis for genome-wide DNA methylation data. bioRxiv. 2020. DOI: <a href="https://www.biorxiv.org/content/10.1101/2020.08.24.265702v1" title="Pre-print">10.1186/s13073-019-0615-0</a>.</p>
+<p>Maksimovic J, Oshlack O, Phipson B. Gene set enrichment analysis for genome-wide DNA methylation data. bioRxiv. 2020. DOI: <a href="https://www.biorxiv.org/content/10.1101/2020.08.24.265702v1" title="Pre-print">https://doi.org/10.1101/2020.08.24.265702</a>.</p>
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