merge dev branch: version 0.2.11

Author: zhuanglaihong

.github/workflows/docs-build.yml

@@ -10,19 +10,21 @@ jobs:
             - uses: actions/checkout@v3
             - uses: actions/setup-python@v4
               with:
-                  python-version: 3.9
+                  python-version: "3.11"
+            - name: Install uv
+              uses: astral-sh/setup-uv@v3
+              with:
+                  version: "latest"
             - name: Install dependencies
               run: |
-                  python -m pip install --upgrade pip
-                  pip install --user --no-cache-dir Cython
-                  pip install --user -r requirements.txt
-                  pip install .
+                  uv pip install --system --no-cache-dir Cython
+                  uv sync --extra docs
             - name: Discover typos with codespell
               run: |
-                  pip install codespell
-                  codespell --skip="*.csv,*.geojson,*.json,*.js,*.html,*cff,./.git" --ignore-words-list="aci,acount,acounts,fallow,hart,hist,nd,ned,ois,wqs,watermask"
+                  uv tool install codespell
+                  uv tool run codespell --skip="*.csv,*.geojson,*.json,*.js,*.html,*cff,./.git" --ignore-words-list="aci,acount,acounts,fallow,hart,hist,nd,ned,ois,wqs,watermask"
             - name: PKG-TEST
               run: |
                   python -m unittest discover tests/
-            - run: pip install -r requirements_docs.txt
+            # Dependencies are already installed with -e .[docs]
             - run: mkdocs gh-deploy --force

.github/workflows/docs.yml

@@ -15,7 +15,7 @@ jobs:
             fail-fast: false
             matrix:
               os: ["macOS-latest"]
-              python-version: ["3.10"]
+              python-version: ["3.11"]
         steps:
           - name: Checkout code
             uses: actions/checkout@v3
@@ -24,6 +24,10 @@ jobs:
             uses: actions/setup-python@v4
             with:
               python-version: ${{ matrix.python-version}}
+          - name: Install uv
+            uses: astral-sh/setup-uv@v3
+            with:
+              version: "latest"
           - name: Install GDAL
             run: |
               brew install gdal
@@ -32,7 +36,4 @@ jobs:
               gdalinfo --version
           - name: Install dependencies
             run: |
-                python -m pip install --upgrade pip
-                pip install --no-cache-dir Cython
-                pip install -r requirements.txt
-                pip install .
+                uv sync --extra dev

.github/workflows/macos.yml

@@ -16,15 +16,15 @@ jobs:
             - name: Set up Python
               uses: actions/setup-python@v4
               with:
-                  python-version: "3.10"
-            - name: Install dependencies
-              run: |
-                  python -m pip install --upgrade pip
-                  pip install setuptools wheel twine
+                  python-version: "3.11"
+            - name: Install uv
+              uses: astral-sh/setup-uv@v3
+              with:
+                  version: "latest"
             - name: Build and publish
               env:
                   TWINE_USERNAME: ${{ secrets.PYPI_USERS }}
                   TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
               run: |
-                  python setup.py sdist bdist_wheel
-                  twine upload dist/*
+                  uv build
+                  uv tool run twine upload dist/*

.github/workflows/pypi.yml

@@ -15,28 +15,29 @@ jobs:
             fail-fast: false
             matrix:
                 config:
-                    - { os: ubuntu-latest, py: "3.10" }
+                    - { os: ubuntu-latest, py: "3.11" }
         steps:
             - name: Checkout Code
               uses: actions/checkout@v3
             - name: Setup Python
               uses: actions/setup-python@v4
               with:
                   python-version: ${{ matrix.config.py }}
+            - name: Install uv
+              uses: astral-sh/setup-uv@v3
+              with:
+                  version: "latest"
             - name: Install GDAL
               run: |
-                  python -m pip install --upgrade pip
-                  pip install --no-cache-dir Cython
-                  pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL
+                  uv pip install --system --no-cache-dir Cython
+                  uv pip install --system --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL
             - name: Test GDAL installation
               run: |
                   python -c "from osgeo import gdal"
                   gdalinfo --version
             - name: Install dependencies
               run: |
-                  pip install --user -r requirements.txt
-                  pip install --user -r requirements_dev.txt
-                  pip install .
+                  uv sync --extra dev
             - name: Create hydro_setting.yml
               run: |
                   echo 'local_data_path:' > hydro_setting.yml

.github/workflows/ubuntu.yml

@@ -12,11 +12,19 @@ jobs:
         runs-on: windows-latest
         steps:
             - uses: actions/checkout@v3
-            - name: Install miniconda
+            - name: Setup Python
+              uses: actions/setup-python@v4
+              with:
+                  python-version: "3.11"
+            - name: Install uv
+              uses: astral-sh/setup-uv@v3
+              with:
+                  version: "latest"
+            - name: Install GDAL via conda (Windows-specific)
               uses: conda-incubator/setup-miniconda@v2
               with:
                   auto-activate-base: true
-                  python-version: "3.10"
+                  python-version: "3.11"
             - name: Install GDAL
               run: conda install -c conda-forge gdal --yes
             - name: Test GDAL installation
@@ -25,10 +33,7 @@ jobs:
                   gdalinfo --version
             - name: Install dependencies
               run: |
-                  python -m pip install --upgrade pip
-                  pip install --no-cache-dir Cython
-                  pip install -r requirements.txt
-                  pip install .
+                  uv sync --extra dev
             # - name: PKG-TEST
             #   run: |
                 #   python -m pytest test/test_data_preprocess.py

.github/workflows/windows.yml

@@ -175,4 +175,13 @@ hydromodel/example/example/*
 !/hydromodel/example/example/data_info_*.json
 !/hydromodel/example/daily_flow_27071.txt
 !/hydromodel/example/daily_rainfall_27071.txt
-outputs/
+# Exclude all files in data directory
+/data/*
+# But allow specific files
+!/data/dhf_data.json
+outputs/
+result_old/
+results/*
+CLAUDE.md
+.claude/*
+GEMINI.md