beacon-api/pyproject.toml at main · P2GX/beacon-api · GitHub

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[project]
name = "beacon-api"
version = "0.1.0"
description = "A fast, modern FastAPI implementation of the GA4GH Beacon v2 API"
readme = "README.md"
requires-python = ">=3.11"
license = { text = "Apache-2.0" }
authors = [
    { name = "Your Name", email = "your.email@example.com" }
]
keywords = ["beacon", "ga4gh", "genomics", "fastapi"]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "License :: OSI Approved :: Apache Software License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
]

dependencies = [
    "fastapi>=0.115.0",
    "uvicorn[standard]>=0.32.0",
    "pydantic>=2.9.0",
    "pydantic-settings>=2.5.0",
    "python-dotenv>=1.0.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=8.3.0",
    "pytest-cov>=6.0.0",
    "pytest-asyncio>=0.24.0",
    "httpx>=0.27.0",
    "ruff>=0.7.0",
    "mypy>=1.13.0",
]

[dependency-groups]
dev = [
    "pytest>=8.3.0",
    "pytest-cov>=6.0.0",
    "pytest-asyncio>=0.24.0",
    "httpx>=0.27.0",
    "ruff>=0.7.0",
    "mypy>=1.13.0",
    "datamodel-code-generator>=0.53.0",
]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.build.targets.wheel]
packages = ["src/beacon_api"]

[tool.ruff]
line-length = 88
target-version = "py311"
exclude = [
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".hg",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "venv",
]

[tool.ruff.lint]
select = [
    "E",   # pycodestyle errors
    "W",   # pycodestyle warnings
    "F",   # pyflakes
    "I",   # isort
    "B",   # flake8-bugbear
    "C4",  # flake8-comprehensions
    "UP",  # pyupgrade
]
ignore = [
    "E501",  # line too long, handled by ruff formatter
    "B008",  # do not perform function calls in argument defaults
    "C901",  # too complex
]

[tool.ruff.lint.per-file-ignores]
"__init__.py" = ["F401"]

[tool.ruff.lint.isort]
known-third-party = ["fastapi", "pydantic", "uvicorn"]

[tool.ruff.format]
quote-style = "double"
indent-style = "space"
skip-magic-trailing-comma = false
line-ending = "auto"

[tool.pytest.ini_options]
testpaths = ["tests"]
pythonpath = ["src"]

[tool.mypy]
python_version = "3.11"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
disallow_untyped_decorators = false
no_implicit_optional = true
warn_redundant_casts = true
warn_unused_ignores = true
warn_no_return = true
follow_imports = "normal"
strict_optional = true

[[tool.mypy.overrides]]
module = "tests.*"
disallow_untyped_defs = false

[tool.coverage.run]
source = ["src"]
omit = ["tests/*", "**/__init__.py"]

[tool.coverage.report]
precision = 2
exclude_lines = [
    "pragma: no cover",
    "def __repr__",
    "raise AssertionError",
    "raise NotImplementedError",
    "if __name__ == .__main__.:",
    "if TYPE_CHECKING:",
    "@abstractmethod",
]