gpsea/pyproject.toml at main · P2GX/gpsea · GitHub

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[build-system]
requires = ["setuptools>=61.0.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "gpsea"
version = "0.9.13"
authors = [
    { name = "Lauren Rekerle", email = "lauren.rekerle@jax.org" },
    { name = "Daniel Danis", email = "daniel.danis@bih-charite.de" },
    { name = "Peter Robinson", email = "peter.robinson@bih-charite.de" },
]
description = "Discover genotype-phenotype correlations with GA4GH phenopackets"
readme = "README.md"
requires-python = ">=3.10"
keywords = [
    "Global Alliance for Genomics and Health",
    "GA4GH Phenopacket Schema",
    "Human Phenotype Ontology",
    "GA4GH",
    "Genotype-phenotype correlation",
    "HPO",
]
license = { file = "LICENSE" }
classifiers = [
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Development Status :: 3 - Alpha",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "hpo-toolkit>=0.3.0",
    "stairval>=0.2.1",
    "Jinja2>=3.1.4,<4.0.0",
    "phenopackets>=2.0.2.post4",
    "pandas>=2.0.0,<3.0.0",
    "requests>=2.25.0,<3.0",
    "scipy>=1.10,<2.0",
    "statsmodels>=0.13.0",
    # numpy==1.23 was released on June 23rd, 2022.
    # numpy==2.0.0 does not break any APIs used by GPSEA.
    "numpy>=1.23",
    "matplotlib>=3.2.0,<4.0",
    "ratelimit>=2.2.1,<3",
    "tqdm>=4.60",
]

[project.optional-dependencies]
test = [
    "phenopacket-store-toolkit>=0.1.2",
    "pytest>=7.0.0,<8.0.0",
    "ruff==0.12.1",
]
docs = [
    "sphinx>=7.0.0",
    "sphinx-rtd-theme>=1.3.0",
    "sphinx-rtd-dark-mode>=1.3.0",
    "sphinx-copybutton>=0.5.0",
]

[project.urls]
homepage = "https://github.com/P2GX/gpsea"
repository = "https://github.com/P2GX/gpsea.git"
documentation = "https://P2GX.github.io/gpsea/stable"
bugtracker = "https://github.com/P2GX/gpsea/issues"

[tool.setuptools]
package-dir = { "" = "src" }

[tool.setuptools.dynamic]
version = { attr = "gpsea.__version__" }