Merge pull request #431 from P2GX/release-0.9.9

Make release `0.9.9`

Author: ielis

.github/workflows/python_ci.yml

@@ -7,19 +7,36 @@ on:
       branches: [ main, develop ]
 
 jobs:
-    run-ci:
-      runs-on: ubuntu-latest
-      strategy:
-        matrix:
-          python-version: ['3.10', '3.11', '3.12']
+  run-ci:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ['3.10', '3.11', '3.12']
 
-      steps:
-        - uses: actions/checkout@v4
-        - name: Initialize Python
-          uses: actions/setup-python@v4.3.1
-          with:
-            python-version: ${{ matrix.python-version }}
-        - name: Install package
-          run: python3 -m pip install --editable .[test]
-        - name: Run pytest tests
-          run: MPLBACKEND=Agg GPSEA_CACHEDIR=.gpsea_ci_cachedir pytest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Initialize Python
+        uses: actions/setup-python@v4.3.1
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install package
+        run: python3 -m pip install --editable .[test]
+      - name: Run pytest tests
+        run: MPLBACKEND=Agg GPSEA_CACHEDIR=.gpsea_ci_cachedir pytest
+  
+  formatting:
+    name: Check code formatting
+    runs-on: ubuntu-latest
+    timeout-minutes: 15
+    steps:
+    - name: Check out
+      uses: actions/checkout@v4
+
+    - name: Initialize Python 3.12
+      uses: actions/setup-python@v4.3.1
+      with:
+        python-version: "3.12"
+    - name: Install package
+      run: python3 -m pip install --editable .[test]
+    - name: Check formatting
+      run:  ruff format --check

LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2023, The Monarch Initiative
+Copyright (c) 2025, Lauren Rekerle, Daniel Danis, Peter N Robinson
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

docs/conf.py

@@ -64,7 +64,7 @@
 # The short X.Y version.
 version = u'0.9'
 # The full version, including alpha/beta/rc tags.
-release = u'0.9.8'
+release = u'0.9.9-dev0'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.