Skip to content

Commit 9f9e853

Browse files
ielisielis
authored
Merge pull request #435 from P2GX/fix-gene-bug
Fix the bug in annotation of imprecise SVs
2 parents 2eda86d + 9194fc7 commit 9f9e853

File tree

92 files changed

+5165
-4314
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

92 files changed

+5165
-4314
lines changed

‎.gpsea_ci_cachedir/protein_cache/NP_852259.1.json‎

Lines changed: 10 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -42,6 +42,16 @@
4242
},
4343
"feature_type": "Compositional bias"
4444
},
45+
{
46+
"info": {
47+
"name": "Low complexity",
48+
"region": {
49+
"start": 34,
50+
"end": 45
51+
}
52+
},
53+
"feature_type": "Compositional bias"
54+
},
4555
{
4656
"info": {
4757
"name": "Polar residues",

‎.gpsea_ci_cachedir/variant_cache/12_114355723_114355723_G_A.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[
22
{
3-
"gene_id": "TBX5",
3+
"gene_symbol": "TBX5",
44
"transcript_id": "NM_000192.3",
55
"hgvs_cdna": "NM_000192.3:c.1366C>T",
66
"is_preferred": false,
@@ -18,7 +18,7 @@
1818
}
1919
},
2020
{
21-
"gene_id": "TBX5",
21+
"gene_symbol": "TBX5",
2222
"transcript_id": "NM_080717.4",
2323
"hgvs_cdna": "NM_080717.4:c.1216C>T",
2424
"is_preferred": false,
@@ -36,7 +36,7 @@
3636
}
3737
},
3838
{
39-
"gene_id": "TBX5",
39+
"gene_symbol": "TBX5",
4040
"transcript_id": "NM_181486.4",
4141
"hgvs_cdna": "NM_181486.4:c.1366C>T",
4242
"is_preferred": true,

‎.gpsea_ci_cachedir/variant_cache/12_114355755_114355756_TG_T.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[
22
{
3-
"gene_id": "TBX5",
3+
"gene_symbol": "TBX5",
44
"transcript_id": "NM_000192.3",
55
"hgvs_cdna": "NM_000192.3:c.1333del",
66
"is_preferred": false,
@@ -18,7 +18,7 @@
1818
}
1919
},
2020
{
21-
"gene_id": "TBX5",
21+
"gene_symbol": "TBX5",
2222
"transcript_id": "NM_080717.4",
2323
"hgvs_cdna": "NM_080717.4:c.1183del",
2424
"is_preferred": false,
@@ -36,7 +36,7 @@
3636
}
3737
},
3838
{
39-
"gene_id": "TBX5",
39+
"gene_symbol": "TBX5",
4040
"transcript_id": "NM_181486.4",
4141
"hgvs_cdna": "NM_181486.4:c.1333del",
4242
"is_preferred": true,

‎.gpsea_ci_cachedir/variant_cache/12_114355784_114355785_CA_C.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[
22
{
3-
"gene_id": "TBX5",
3+
"gene_symbol": "TBX5",
44
"transcript_id": "NM_000192.3",
55
"hgvs_cdna": "NM_000192.3:c.1304del",
66
"is_preferred": false,
@@ -18,7 +18,7 @@
1818
}
1919
},
2020
{
21-
"gene_id": "TBX5",
21+
"gene_symbol": "TBX5",
2222
"transcript_id": "NM_080717.4",
2323
"hgvs_cdna": "NM_080717.4:c.1154del",
2424
"is_preferred": false,
@@ -36,7 +36,7 @@
3636
}
3737
},
3838
{
39-
"gene_id": "TBX5",
39+
"gene_symbol": "TBX5",
4040
"transcript_id": "NM_181486.4",
4141
"hgvs_cdna": "NM_181486.4:c.1304del",
4242
"is_preferred": true,

‎.gpsea_ci_cachedir/variant_cache/12_114356064_114356065_TA_T.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[
22
{
3-
"gene_id": "TBX5",
3+
"gene_symbol": "TBX5",
44
"transcript_id": "NM_000192.3",
55
"hgvs_cdna": "NM_000192.3:c.1024del",
66
"is_preferred": false,
@@ -18,7 +18,7 @@
1818
}
1919
},
2020
{
21-
"gene_id": "TBX5",
21+
"gene_symbol": "TBX5",
2222
"transcript_id": "NM_080717.4",
2323
"hgvs_cdna": "NM_080717.4:c.874del",
2424
"is_preferred": false,
@@ -36,7 +36,7 @@
3636
}
3737
},
3838
{
39-
"gene_id": "TBX5",
39+
"gene_symbol": "TBX5",
4040
"transcript_id": "NM_181486.4",
4141
"hgvs_cdna": "NM_181486.4:c.1024del",
4242
"is_preferred": true,

‎.gpsea_ci_cachedir/variant_cache/12_114366207_114366208_GC_G.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[
22
{
3-
"gene_id": "TBX5",
3+
"gene_symbol": "TBX5",
44
"transcript_id": "NM_000192.3",
55
"hgvs_cdna": "NM_000192.3:c.939del",
66
"is_preferred": false,
@@ -18,7 +18,7 @@
1818
}
1919
},
2020
{
21-
"gene_id": "TBX5",
21+
"gene_symbol": "TBX5",
2222
"transcript_id": "NM_080717.4",
2323
"hgvs_cdna": "NM_080717.4:c.789del",
2424
"is_preferred": false,
@@ -36,7 +36,7 @@
3636
}
3737
},
3838
{
39-
"gene_id": "TBX5",
39+
"gene_symbol": "TBX5",
4040
"transcript_id": "NM_181486.4",
4141
"hgvs_cdna": "NM_181486.4:c.939del",
4242
"is_preferred": true,

‎.gpsea_ci_cachedir/variant_cache/12_114366241_114366242_CT_C.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[
22
{
3-
"gene_id": "TBX5",
3+
"gene_symbol": "TBX5",
44
"transcript_id": "NM_000192.3",
55
"hgvs_cdna": "NM_000192.3:c.905del",
66
"is_preferred": false,
@@ -18,7 +18,7 @@
1818
}
1919
},
2020
{
21-
"gene_id": "TBX5",
21+
"gene_symbol": "TBX5",
2222
"transcript_id": "NM_080717.4",
2323
"hgvs_cdna": "NM_080717.4:c.755del",
2424
"is_preferred": false,
@@ -36,7 +36,7 @@
3636
}
3737
},
3838
{
39-
"gene_id": "TBX5",
39+
"gene_symbol": "TBX5",
4040
"transcript_id": "NM_181486.4",
4141
"hgvs_cdna": "NM_181486.4:c.905del",
4242
"is_preferred": true,

‎.gpsea_ci_cachedir/variant_cache/12_114366267_114366267_C_A.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[
22
{
3-
"gene_id": "TBX5",
3+
"gene_symbol": "TBX5",
44
"transcript_id": "NM_000192.3",
55
"hgvs_cdna": "NM_000192.3:c.880G>T",
66
"is_preferred": false,
@@ -18,7 +18,7 @@
1818
}
1919
},
2020
{
21-
"gene_id": "TBX5",
21+
"gene_symbol": "TBX5",
2222
"transcript_id": "NM_080717.4",
2323
"hgvs_cdna": "NM_080717.4:c.730G>T",
2424
"is_preferred": false,
@@ -36,7 +36,7 @@
3636
}
3737
},
3838
{
39-
"gene_id": "TBX5",
39+
"gene_symbol": "TBX5",
4040
"transcript_id": "NM_181486.4",
4141
"hgvs_cdna": "NM_181486.4:c.880G>T",
4242
"is_preferred": true,

‎.gpsea_ci_cachedir/variant_cache/12_114366274_114366274_G_T.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[
22
{
3-
"gene_id": "TBX5",
3+
"gene_symbol": "TBX5",
44
"transcript_id": "NM_000192.3",
55
"hgvs_cdna": "NM_000192.3:c.873C>A",
66
"is_preferred": false,
@@ -18,7 +18,7 @@
1818
}
1919
},
2020
{
21-
"gene_id": "TBX5",
21+
"gene_symbol": "TBX5",
2222
"transcript_id": "NM_080717.4",
2323
"hgvs_cdna": "NM_080717.4:c.723C>A",
2424
"is_preferred": false,
@@ -36,7 +36,7 @@
3636
}
3737
},
3838
{
39-
"gene_id": "TBX5",
39+
"gene_symbol": "TBX5",
4040
"transcript_id": "NM_181486.4",
4141
"hgvs_cdna": "NM_181486.4:c.873C>A",
4242
"is_preferred": true,

‎.gpsea_ci_cachedir/variant_cache/12_114366312_114366312_G_A.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[
22
{
3-
"gene_id": "TBX5",
3+
"gene_symbol": "TBX5",
44
"transcript_id": "NM_000192.3",
55
"hgvs_cdna": "NM_000192.3:c.835C>T",
66
"is_preferred": false,
@@ -18,7 +18,7 @@
1818
}
1919
},
2020
{
21-
"gene_id": "TBX5",
21+
"gene_symbol": "TBX5",
2222
"transcript_id": "NM_080717.4",
2323
"hgvs_cdna": "NM_080717.4:c.685C>T",
2424
"is_preferred": false,
@@ -36,7 +36,7 @@
3636
}
3737
},
3838
{
39-
"gene_id": "TBX5",
39+
"gene_symbol": "TBX5",
4040
"transcript_id": "NM_181486.4",
4141
"hgvs_cdna": "NM_181486.4:c.835C>T",
4242
"is_preferred": true,

0 commit comments

Comments
 (0)