Merge pull request #443 from P2GX/release-0.9.13

Release `0.9.13`

Author: ielis

.github/workflows/release.yml

@@ -0,0 +1,29 @@
+name: Publish to PyPI
+
+on:
+    push:
+        tags:
+            - "v*"
+
+jobs:
+    build-and-publish:
+        runs-on: ubuntu-latest
+
+        steps:
+            - uses: actions/checkout@v4
+            - name: Set up Python
+              uses: actions/setup-python@v5
+              with:
+                  python-version: "3.12"
+            - name: Install the package
+              run: python -m pip install --editable .[test]
+            - name: Run tests
+              run: pytest
+            - name: Install build libraries
+              run: python3 -m pip install build
+            - name: Build package
+              run: python3 -m build
+            - name: Publish package to PyPI
+              uses: pypa/gh-action-pypi-publish@release/v1
+              with:
+                  password: ${{ secrets.PYPI_TOKEN }}

.gpsea_ci_cachedir/variant_cache/MT_11778_11778_G_A.json

@@ -122,8 +122,8 @@ We execute the analysis by running
 ...     pheno_scorer=pheno_scorer,
 ... )
 
->>> result.pval
-0.741216622359659
+>>> result.pval  # doctest: +ELLIPSIS
+0.7412166223596...
 
 Show data frame with scores
 

docs/user-guide/analyses/measurements.rst

@@ -4,12 +4,12 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "gpsea"
-version = "0.9.12"
+version = "0.9.13"
 authors = [
-    {name = "Lauren Rekerle", email="lauren.rekerle@jax.org"},
-    {name = "Daniel Danis", email="daniel.danis@bih-charite.de"},
-    {name = "Peter Robinson", email="peter.robinson@bih-charite.de"},
-     ]
+    { name = "Lauren Rekerle", email = "lauren.rekerle@jax.org" },
+    { name = "Daniel Danis", email = "daniel.danis@bih-charite.de" },
+    { name = "Peter Robinson", email = "peter.robinson@bih-charite.de" },
+]
 description = "Discover genotype-phenotype correlations with GA4GH phenopackets"
 readme = "README.md"
 requires-python = ">=3.10"
@@ -30,7 +30,7 @@ classifiers = [
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
     "Intended Audience :: Science/Research",
-    "Topic :: Scientific/Engineering :: Bio-Informatics"
+    "Topic :: Scientific/Engineering :: Bio-Informatics",
 ]
 dependencies = [
     "hpo-toolkit>=0.3.0",