Documentation for DeVries score

[pnrobinson]

https://monarch-initiative.github.io/gpsea/stable/user-guide/analyses/partitioning/phenotype/devries.html

The documentation should have a complete example or a link to this page: https://monarch-initiative.github.io/gpsea/stable/user-guide/analyses/phenotype-scores.html

from gpsea.analysis.pscore import DeVriesPhenotypeScorer
from gpsea.analysis.pscore.stats import MannWhitneyStatistic
from gpsea.analysis.pscore import PhenotypeScoreAnalysis

score_statistic = MannWhitneyStatistic()
score_analysis = PhenotypeScoreAnalysis(
    score_statistic=score_statistic,
)

pheno_scorer = DeVriesPhenotypeScorer(hpo)
result = score_analysis.compare_genotype_vs_phenotype_score(
    cohort=cohort,
    gt_clf=missense_clf,
    pheno_scorer=pheno_scorer,
)
result.pval

[ielis]

The documentation should have a complete example ...

I think it is not practical to show a complete example for all scorers. However, the docs could indeed be improved by listing all available scorers and showing how to implement one from scratch.

Let me work on that.