cleaning up APIs

Author: pnrobinson

package.json

@@ -1,6 +1,6 @@
 {
   "name": "phenoboard",
-  "version": "0.5.103",
+  "version": "0.5.104",
   "scripts": {
     "ng": "ng",
     "start": "nx serve phenoboard --port 1420",

src-tauri/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "phenoboard"
-version = "0.5.103"
+version = "0.5.104"
 description = "Curate cohorts of GA4GH Phenopackets"
 authors = ["Peter N Robinson"]
 edition = "2021"
@@ -25,7 +25,7 @@ ontolius = "0.7.2"
 reqwest = { version = "0.13.2", features = ["json", "blocking"] }
 rfd = { version = "0.16.0", default-features = false}
 fenominal = { git = 'https://github.com/P2GX/fenominal.git',  tag = '0.1.18' }
-ga4ghphetools = { git = 'https://github.com/P2GX/ga4ghphetools.git', tag = '0.5.23' }
+ga4ghphetools = { git = 'https://github.com/P2GX/ga4ghphetools.git', tag = '0.5.24' }
 #ga4ghphetools = { path = "../../ga4ghphetools" }
 serde = { version = "1.0.219", features = ["derive"] }
 serde_json = "1.0.148"
@@ -45,7 +45,7 @@ nucleo-matcher = "0.3"
 
 [target.'cfg(target_os = "linux")'.dependencies]
 rfd = { version = "0.16.0", default-features = false, features = ["xdg-portal", "tokio"] }
-
+# rfd buggy with version 0.17.2: package `phenoboard` depends on `rfd` with feature `tokio` but `rfd` does not have that feature.
 
 
 

src-tauri/tauri.conf.json

@@ -1,7 +1,7 @@
 {
   "$schema": "https://schema.tauri.app/config/2",
   "productName": "phenoboard",
-  "version": "0.5.103",
+  "version": "0.5.104",
   "identifier": "org.p2gx.phenoboard",
   "build": {
     "beforeDevCommand": "npx nx serve phenoboard --configuration=development  --no-cloud",

src/app/cohortdialog/cohortdialog.component.html

@@ -59,7 +59,7 @@ <h3>Gene Info</h3>
         <p class="error-text">Valid HGNC ID required (e.g., HGNC:1234)</p>
       }
     </div>
-    
+
     <div class="form-field">
     <div class="form-field flex gap-2">
       <input 
@@ -75,7 +75,7 @@ <h3>Gene Info</h3>
         @if (isLoading()) {
           <span class="animate-spin">⏳</span>
         } @else {
-          🔍 Fetch info
+          🔍 Fetch HGNC/Transcript info
         }
         </button>
     </div>

src/app/hpominingverifier/hpominingverifier.component.html

@@ -127,10 +127,16 @@ export class EtlSessionService {
     const value = val.toLowerCase().trim();
     const femaleSymbols = new Set(["female", "woman","f", "w", "girl", "fem"]);
     const maleSymbols = new Set(["male","man","m","boy", "masc"]);
+    const unknownSymbols = new Set(["u", "ukn", "unknown", "?"]);
+    const otherSymbols = new Set(["o", "other"]);
     if (femaleSymbols.has(value)) {
       return "F";
     } else if (maleSymbols.has(value)) {
       return "M";
+    } else if (unknownSymbols.has(value)) {
+      return "U";
+    } else if (otherSymbols.has(value)) {
+      return "O";
     } else {
       return undefined;
     }