Adding pilot French translation (#85)

* Adding pilot French translation

* polishing French translation

* corrected french preamble and bug

---------

Co-authored-by: Leonardo macOS <leonardochimirri94@gmail.com>

Author: pnrobinson

src/main/java/org/monarchinitiative/phenopacket2prompt/cmd/GbtTranslateBatchCommand.java

@@ -123,6 +123,12 @@ public Integer call() {
         Utility.writeMissingTranslations(chinese.getMissingTranslations(),
                 missingTranslationsPath, "chinese.txt");
 
+        // french
+        PromptGenerator french = utility.french();
+        Utility.outputPromptsInternational(ppktFiles,"fr", french, outdirname);
+        Utility.writeMissingTranslations(french.getMissingTranslations(),
+                missingTranslationsPath, "french.txt");
+
         // Japanese
         // Note official two-letter language code for Japanese is JP, but our files have JA
         PromptGenerator japanese = utility.japanese();

src/main/java/org/monarchinitiative/phenopacket2prompt/cmd/TestDriveCommand.java

@@ -336,10 +336,16 @@ public Integer call() {
         sb.append("Spanish\n");
         sb.append(HEADER_LINE);
         sb.append(spText);
+        // Dutch
         String nlText = createPrompts(individualList, utility.dutch());
         sb.append("Dutch\n");
         sb.append(HEADER_LINE);
         sb.append(nlText);
+        // French
+        String frText = createPrompts(individualList, utility.french());
+        sb.append("French\n");
+        sb.append(HEADER_LINE);
+        sb.append(frText);
         // GERMAN
         PromptGenerator german = utility.german();
         String deText = createPrompts(individualList, german);

src/main/java/org/monarchinitiative/phenopacket2prompt/cmd/Utility.java

@@ -62,6 +62,8 @@ public PromptGenerator italian() {
         return PromptGenerator.italian(internationalMap.get("it"));
     }
 
+    public PromptGenerator french() { return PromptGenerator.french(internationalMap.get("fr")); }
+
     public PromptGenerator chinese() {
         return PromptGenerator.chinese(internationalMap.get("zh"));
     }

src/main/java/org/monarchinitiative/phenopacket2prompt/output/PromptGenerator.java

@@ -9,6 +9,8 @@
 import org.monarchinitiative.phenopacket2prompt.output.impl.czech.CzechPromptGenerator;
 import org.monarchinitiative.phenopacket2prompt.output.impl.czech.PpktPhenotypicFeatureCzech;
 import org.monarchinitiative.phenopacket2prompt.output.impl.english.EnglishPromptGenerator;
+import org.monarchinitiative.phenopacket2prompt.output.impl.french.FrenchPromptGenerator;
+import org.monarchinitiative.phenopacket2prompt.output.impl.french.PpktPhenotypicfeatureFrench;
 import org.monarchinitiative.phenopacket2prompt.output.impl.german.GermanPromptGenerator;
 import org.monarchinitiative.phenopacket2prompt.output.impl.german.PpktPhenotypicfeatureGerman;
 import org.monarchinitiative.phenopacket2prompt.output.impl.japanese.JapanesePromptGenerator;
@@ -63,6 +65,11 @@ static PromptGenerator dutch(HpInternational international) {
         return new DutchPromptGenerator(pfgen);
     }
 
+    static PromptGenerator french(HpInternational international) {
+        PpktPhenotypicFeatureGenerator pfgen = new PpktPhenotypicfeatureFrench(international);
+        return new FrenchPromptGenerator(pfgen);
+    }
+
     static PromptGenerator german(HpInternational international) {
         PpktPhenotypicFeatureGenerator pfgen = new PpktPhenotypicfeatureGerman(international);
         return new GermanPromptGenerator(pfgen);

src/main/java/org/monarchinitiative/phenopacket2prompt/output/impl/french/FrenchPromptGenerator.java

@@ -0,0 +1,73 @@
+package org.monarchinitiative.phenopacket2prompt.output.impl.french;
+
+import org.monarchinitiative.phenopacket2prompt.model.OntologyTerm;
+import org.monarchinitiative.phenopacket2prompt.model.PhenopacketAge;
+import org.monarchinitiative.phenopacket2prompt.model.PhenopacketSex;
+import org.monarchinitiative.phenopacket2prompt.model.PpktIndividual;
+import org.monarchinitiative.phenopacket2prompt.output.PPKtIndividualInfoGenerator;
+import org.monarchinitiative.phenopacket2prompt.output.PhenopacketTextGenerator;
+import org.monarchinitiative.phenopacket2prompt.output.PpktPhenotypicFeatureGenerator;
+import org.monarchinitiative.phenopacket2prompt.output.PromptGenerator;
+
+import java.util.List;
+import java.util.Set;
+
+public class FrenchPromptGenerator implements PromptGenerator {
+
+
+    private final PPKtIndividualInfoGenerator ppktAgeSexGenerator;
+
+    private final PpktPhenotypicFeatureGenerator ppktPhenotypicFeatureGenerator;
+
+    private final PhenopacketTextGenerator ppktTextGenerator = new PhenopacketTextGenerator() {};
+
+    public FrenchPromptGenerator(PpktPhenotypicFeatureGenerator pfgen) {
+        ppktAgeSexGenerator = new PpktIndividualFrench();
+        this.ppktPhenotypicFeatureGenerator = pfgen;
+    }
+
+    @Override
+    public String queryHeader() {
+        return ppktTextGenerator.LLM_PROMPT_HEADER("french");
+    }
+
+    @Override
+    public String queryFooter() {
+        return ppktTextGenerator.LLM_PROMPT_FOOTER("french");
+    }
+    @Override
+    public String getIndividualInformation(PpktIndividual ppktIndividual) {
+        return this.ppktAgeSexGenerator.getIndividualDescription(ppktIndividual);
+    }
+
+    @Override
+    public String formatFeatures(List<OntologyTerm> ontologyTerms) {
+        return ppktPhenotypicFeatureGenerator.formatFeatures(ontologyTerms);
+    }
+
+    @Override
+    public String getVignetteAtAge(PhenopacketAge page, PhenopacketSex psex, List<OntologyTerm> terms) {
+        String ageString = this.ppktAgeSexGenerator.atAgeForVignette(page);
+        String features = formatFeatures(terms);
+        return String.format("%s, %s présentait les symptômes suivants %s", ageString, ppktAgeSexGenerator.heSheIndividual(psex), features);
+    }
+
+
+
+    @Override
+    public Set<String> getMissingTranslations() {
+        return this.ppktPhenotypicFeatureGenerator.getMissingTranslations();
+    }
+
+
+    @Override
+    public String getVignetteAtOnset(PpktIndividual individual){
+        String person = switch (individual.getSex()) {
+            case MALE -> "Il";
+            case FEMALE -> "Elle";
+            default -> "Le patient";
+        };
+        return this.ppktPhenotypicFeatureGenerator.featuresAtOnset(person, individual.getPhenotypicFeaturesAtOnset());
+    }
+
+}