Merge pull request #94 from P2GX/visual_corrections

Enhance metadata notes with version and citation info

Author: leokim-l

scripts/update_and_release_to_zenodo.py

@@ -45,6 +45,13 @@ def create_new_version():
 
     today_date = datetime.today().strftime("%Y-%m-%d")
     metadata["publication_date"] = today_date
+    metadata["notes"] = (
+        f"Phenopacket-store version {LATEST_PPKT_STORE} and "
+        f"HPO version {LATEST_HPO} were used. "
+        f'Beyond this record, please also cite '
+        f'<a href="https://doi.org/10.1016/j.ebiom.2025.105957">'
+        f'this paper</a>.'
+    )
     metadata["notes"] = f"Used phenopacket-store version {LATEST_PPKT_STORE} and HPO version {LATEST_HPO}. Beyond this record, please also cite https://doi.org/10.1016/j.ebiom.2025.105957"
     metadata_update = {"metadata": metadata}
     #TODO maybe add further data here about number of prompts in each language? Should be easy to do with JSONL

scripts/zenodo_metadata.json

@@ -22,5 +22,5 @@
     "code:codeRepository": "https://github.com/monarch-initiative/phenopacket2prompt",
     "code:programmingLanguage": [{"id": "java", "title": {"en": "Java"}}]
   },
-  "references": "https://doi.org/10.1016/j.ebiom.2025.105957"
+  "references": ["https://doi.org/10.1016/j.ebiom.2025.105957"]
 }