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Add a daunnc/pdal-mbio image Dockerfile with installed MB-System
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‎scripts/docker/1.8.0/debian/mbio/Dockerfile‎

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FROM ubuntu:bionic
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MAINTAINER Grigory Pomadchin <[email protected]>
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ENV CC gcc
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ENV CXX g++
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RUN dpkg --add-architecture i386
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RUN apt-get update -y
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RUN apt-get install -y wget
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RUN apt-get install -y xorg-dev
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RUN apt-get install -y libxm4:i386 libuil4:i386 libmrm4:i386 libxm4 libuil4 libmrm4
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RUN apt-get install -y libmotif-common libmotif-dev libgl1-mesa-dev libglu1-mesa-dev
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RUN apt-get install -y mesa-common-dev libfftw3-3 gfortran libfftw3-dev
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RUN apt-get update -qq; \
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apt-get -qq remove postgis; \
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apt-get install -y --fix-missing --no-install-recommends \
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software-properties-common
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RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --fix-missing --no-install-recommends \
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build-essential \
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ca-certificates \
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cmake \
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curl \
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gfortran \
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git \
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libgeotiff-dev \
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libarpack2-dev \
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libflann-dev \
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libhdf5-serial-dev \
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liblapack-dev \
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libtiff5-dev \
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openssh-client \
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python3-dev \
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python3-numpy \
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wget \
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automake \
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libtool \
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libspatialite-dev \
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libsqlite3-mod-spatialite \
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libhdf5-dev \
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libjsoncpp-dev \
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libboost-filesystem1.65-dev \
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libboost-iostreams1.65-dev \
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libboost-program-options1.65-dev \
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libboost-system1.65-dev \
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libboost-thread1.65-dev \
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clang \
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libproj-dev \
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libc6-dev \
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libnetcdf-dev \
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libpng-dev \
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libjpeg-dev \
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libgif-dev \
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libwebp-dev \
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libhdf4-alt-dev \
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libhdf5-dev \
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unixodbc-dev \
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libsqlite3-dev \
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libltdl-dev \
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libcurl4-openssl-dev \
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libspatialite-dev \
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cython \
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python3-pip \
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time \
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ninja-build \
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python3-setuptools \
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unzip \
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libeigen3-dev \
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libxml2-dev \
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libssl-dev \
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liblzma-dev \
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libzstd1-dev \
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pkg-config \
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libgdal-dev \
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bash-completion
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RUN apt-get install -y libnetcdf-dev netcdf-bin libproj12 libproj-dev gdal-bin libgdal-dev
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# Follow http://gmt.soest.hawaii.edu/projects/gmt/wiki/BuildingGMT
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RUN apt-get install -y subversion cmake
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RUN mkdir /gmt && cd /gmt && wget ftp://ftp.soest.hawaii.edu/gshhg/legacy/gshhg-gmt-2.3.6.tar.gz && tar xvzf gshhg-gmt-2.3.6.tar.gz && rm gshhg-gmt-2.3.6.tar.gz
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RUN cd /gmt && wget ftp://ftp.soest.hawaii.edu/dcw/dcw-gmt-1.1.2.tar.gz && tar xvzf dcw-gmt-1.1.2.tar.gz && rm dcw-gmt-1.1.2.tar.gz
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RUN cd /gmt && svn checkout svn://gmtserver.soest.hawaii.edu/gmt5/trunk gmt5-dev && cd /gmt/gmt5-dev && export CMAKE_INSTALL_PREFIX=/opt/gmt && export GSHHG_ROOT=/gmt/gshhg-gmt-2.3.6 && export DCW_ROOT=/gmt/dcw-gmt-1.1.2 && mkdir build && cd build && cmake .. && make && make install
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# RUN wget ftp://ftp.ldeo.columbia.edu/pub/MB-System/MB-System.tar.gz && tar xvzf MB-System.tar.gz && rm MB-System.tar.gz
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RUN apt-get install -y git
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RUN git clone https://github.com/dwcaress/MB-System.git && cd /MB-System && chmod 777 ./configure && ./configure && make && make install
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ARG PDAL_VERSION=1.8-maintenance
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ARG DESTDIR="/build"
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ARG tiledb_version=1.4.1
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RUN git clone https://github.com/LASzip/LASzip.git laszip; \
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cd laszip; \
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git checkout 3.1.1; \
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cmake \
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-G Ninja \
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-DCMAKE_INSTALL_PREFIX=/usr/ \
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-DCMAKE_BUILD_TYPE="Release" \
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. ; \
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ninja ; \
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ninja install; \
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DESTDIR=/ ninja install; \
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rm -rf laszip
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RUN git clone https://github.com/hobu/laz-perf.git; \
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cd laz-perf; \
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mkdir build; \
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cd build; \
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cmake .. \
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-G Ninja \
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-DCMAKE_INSTALL_PREFIX=/usr \
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-DCMAKE_BUILD_TYPE="Release" \
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; \
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ninja; \
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ninja install; \
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DESTDIR=/ ninja install; \
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rm -rf /laz-perf
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RUN mkdir /nitro; cd /nitro; \
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git clone https://github.com/hobu/nitro; \
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cd nitro; \
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mkdir build; \
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cd build; \
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cmake ..\
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-G Ninja -DCMAKE_INSTALL_PREFIX=/usr/ \
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; \
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ninja; \
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ninja install; \
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DESTDIR=/ ninja install; \
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rm -rf /nitro
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RUN git clone --depth 1 --branch v0.4.6 https://github.com/gadomski/fgt.git \
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&& cd fgt \
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&& cmake . \
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-DWITH_TESTS=OFF \
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-DBUILD_SHARED_LIBS=ON \
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-DEIGEN3_INCLUDE_DIR=/usr/include/eigen3 \
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-DCMAKE_INSTALL_PREFIX=/usr \
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-DCMAKE_BUILD_TYPE=Release \
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-G "Ninja" \
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&& ninja \
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&& ninja install \
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&& DESTDIR=/ ninja install \
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&& rm -rf /fgt
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RUN git clone --depth 1 --branch v0.5.1 https://github.com/gadomski/cpd.git \
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&& cd cpd \
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&& cmake . \
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-DWITH_TESTS=OFF \
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-DWITH_JSONCPP=OFF \
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-DWITH_FGT=ON \
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-DCMAKE_SYSTEM_PREFIX_PATH="${DESTDIR}/usr" \
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-DCMAKE_CXX_FLAGS="-isystem ${DESTDIR}/usr/include" \
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-DWITH_STRICT_WARNINGS=OFF \
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-DWITH_DOCS=OFF \
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-DEIGEN3_INCLUDE_DIR=/usr/include/eigen3 \
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-DBUILD_SHARED_LIBS=ON \
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-DCMAKE_INSTALL_PREFIX=/usr \
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-DCMAKE_BUILD_TYPE=Release \
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-G "Ninja" \
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&& ninja \
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&& ninja install \
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&& DESTDIR=/ ninja install \
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&& rm -rf /cpd
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#RUN \
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# wget https://github.com/TileDB-Inc/TileDB/archive/${tiledb_version}.tar.gz; \
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# tar xzf ${tiledb_version}.tar.gz; \
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# rm ${tiledb_version}.tar.gz; \
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# cd TileDB-${tiledb_version}; \
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# mkdir build; \
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# cd build; \
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# ../bootstrap --prefix=/usr --enable-s3; \
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# make -j2; \
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# make install-tiledb; \
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# DESTDIR=/ make install-tiledb; \
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# cd /; \
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# rm -rf TileDB-${tiledb_version};
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RUN git clone --depth 1 --branch ${PDAL_VERSION} https://github.com/PDAL/PDAL.git pdal-git; \
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cd pdal-git; \
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mkdir build;\
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cd build; \
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cmake .. \
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-G Ninja \
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-DCMAKE_INSTALL_PREFIX=/usr/ \
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-DBUILD_PLUGIN_CPD=ON \
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-DBUILD_PLUGIN_MBIO=ON \
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-DBUILD_PLUGIN_GREYHOUND=ON \
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-DBUILD_PLUGIN_I3S=ON \
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-DBUILD_PLUGIN_HEXBIN=ON \
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-DBUILD_PLUGIN_ICEBRIDGE=ON \
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-DBUILD_PLUGIN_MRSID=OFF \
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-DBUILD_PLUGIN_NITF=ON \
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-DBUILD_PLUGIN_OCI=OFF \
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-DBUILD_PLUGIN_PCL=OFF \
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-DBUILD_PLUGIN_PGPOINTCLOUD=ON \
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-DPYTHON_EXECUTABLE=/usr/bin/python3 \
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-DBUILD_PLUGIN_SQLITE=ON \
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-DBUILD_PLUGIN_RIVLIB=OFF \
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-DBUILD_PLUGIN_PYTHON=ON \
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-DBUILD_PLUGIN_TILEDB=OFF \
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-DENABLE_CTEST=OFF \
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-DWITH_LAZPERF=ON \
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-DWITH_LASZIP=ON \
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-DWITH_ZSTD=ON \
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-DWITH_ZLIB=ON \
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-DWITH_TESTS=OFF \
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-DWITH_PDAL_JNI=OFF \
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-DCMAKE_BUILD_TYPE=Release \
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; \
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ninja; \
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ninja install; \
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DESTDIR=/ ninja install; \
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rm -rf /pdal-git
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#
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# Haru hasn't been updated for years. This tag is the head.
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#
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RUN git clone https://github.com/libharu/libharu \
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&& cd libharu \
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&& git checkout d84867ebf9f3de6afd661d2cdaff102457fbc371 \
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&& mkdir build \
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&& cd build \
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&& cmake \
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-G Ninja \
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-DCMAKE_INSTALL_PREFIX=/usr/ \
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-DCMAKE_BUILD_TYPE=Release \
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-DCMAKE_PREFIX_PATH:FILEPATH="${DESTDIR}" \
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-DCMAKE_SYSTEM_PREFIX_PATH="${DESTDIR}/usr" \
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-DCMAKE_CXX_FLAGS="-isystem ${DESTDIR}/usr/include" \
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..; \
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ninja; \
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ninja install; \
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DESTDIR=/ ninja install; \
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rm -rf /libharu
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RUN git clone https://github.com/PDAL/PRC \
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&& cd PRC \
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&& mkdir build \
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&& cd build \
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&& CXXFLAGS="-fno-stack-protector" CFLAGS="-fno-stack-protector" cmake \
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-DCMAKE_INSTALL_PREFIX=/usr/ \
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-DPDAL_DIR="/usr/lib/pdal/cmake" \
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-DCMAKE_BUILD_TYPE=Release .. \
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-G "Ninja" \
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&& ninja \
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&& ninja install \
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&& DESTDIR=/ ninja install \
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&& rm -rf /PRC
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RUN \
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git clone https://github.com/pubgeo/pubgeo.git \
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&& cd pubgeo \
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&& mkdir build \
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&& cd build \
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&& CXXFLAGS="-fno-stack-protector" CFLAGS="-fno-stack-protector" cmake \
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-DCMAKE_INSTALL_PREFIX=/usr/ \
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-DPDAL_DIR="/usr/lib/pdal/cmake" \
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-DCMAKE_BUILD_TYPE=Release .. \
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-G "Ninja" \
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&& ninja \
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&& ninja install \
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&& DESTDIR=/ ninja install \
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&& rm -rf /pubgeo
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# FROM ubuntu:bionic as runner
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RUN apt-get update; \
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DEBIAN_FRONTEND=noninteractive apt-get install -y \
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sudo curl \
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vim unzip \
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unixodbc \
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libgeotiff2 \
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libgeotiff-epsg \
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libexpat1 \
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libxml2 \
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libjsoncpp1 \
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libwebp6 \
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netcdf-bin \
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libhdf4-0-alt \
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libgif7 \
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libdapclient6v5 \
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libspatialite7 \
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libsqlite3-mod-spatialite \
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spatialite-bin \
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libtiff5 \
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libflann1.9 \
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libssl1.1 \
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libpython2.7 \
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libproj-dev \
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proj-bin \
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gdal-bin \
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proj-data \
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zlib1g \
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libpng16-16 \
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python3-setuptools \
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liblzma5 \
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libzstd1 \
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libhdf5-cpp-100
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RUN date
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# COPY --from=builder /build/usr/bin/ /usr/bin/
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# COPY --from=builder /build/usr/lib/ /usr/lib/
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# COPY --from=builder /build/usr/include/ /usr/include/
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RUN \
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curl -LOs http://download.osgeo.org/proj/proj-datumgrid-1.8.zip && unzip -j -u -o proj-datumgrid-1.8.zip -d /usr/share/proj; \
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curl -LOs http://download.osgeo.org/proj/proj-datumgrid-europe-1.2.zip && unzip -j -u -o proj-datumgrid-europe-1.2.zip -d /usr/share/proj; \
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curl -LOs http://download.osgeo.org/proj/proj-datumgrid-oceania-1.0.zip && unzip -j -u -o proj-datumgrid-oceania-1.0.zip -d /usr/share/proj; \
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curl -LOs http://download.osgeo.org/proj/proj-datumgrid-world-1.0.zip && unzip -j -u -o proj-datumgrid-world-1.0.zip -d /usr/share/proj; \
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curl -LOs http://download.osgeo.org/proj/proj-datumgrid-north-america-1.2.zip && unzip -j -u -o proj-datumgrid-north-america-1.2.zip -d /usr/share/proj;
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RUN set -ex && \
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apt update -y && \
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apt install \
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openjdk-8-jdk \
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ca-certificates-java -y
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ENV JAVA_HOME /usr/lib/jvm/java-1.8.0-openjdk-amd64
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