A Java-based tool for transforming provider-specific database schemas into the standardized data model used by PDX Finder. This transformation ensures that diverse data sources can be harmonized and integrated into the PDX Finder platform.
The PDX Transformer is a component of the PDX Finder project, which aggregates clinical, genomic, and functional data from patient-derived xenograft (PDX) models to support cancer research. By converting various provider data schemas into a unified format, the transformer facilitates consistent data integration and analysis.
src/: Contains the main Java source code for the transformer.target/classes/templates/: Directory for compiled templates and resources.pom.xml: Maven project configuration file.
- Java Development Kit (JDK) 8 or higher
- Maven 3.6 or higher
git clone https://github.com/PDCMFinder/pdx-transformer.git
cd pdx-transformer
mvn clean install