diff --git a/.github/workflows/python-test.yml b/.github/workflows/python-test.yml
index d309c5492..b77d2a08a 100644
--- a/.github/workflows/python-test.yml
+++ b/.github/workflows/python-test.yml
@@ -219,7 +219,7 @@ jobs:
         $env:LLVM_SYS_140_PREFIX = $env:LLVM_SYS_140_PREFIX
 
         # Build and test
-        make build
+        make build-debug
         make pytest-all
 
     - name: Build and test PECOS (non-Windows)
@@ -266,7 +266,7 @@ jobs:
         fi
 
         # Build the project
-        make build
+        make build-debug
 
         # After build, verify the extension module on macOS
         if [[ "${{ runner.os }}" == "macOS" ]]; then
diff --git a/Cargo.lock b/Cargo.lock
index 0d5d5324b..5a6817eb9 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -258,7 +258,6 @@ dependencies = [
  "rand 0.9.2",
  "rand_chacha",
  "rand_xoshiro",
- "romu",
  "wide 1.0.2",
  "wyrand",
 ]
@@ -1937,9 +1936,9 @@ checksum = "7aedcccd01fc5fe81e6b489c15b247b8b0690feb23304303a9e560f37efc560a"
 
 [[package]]
 name = "icu_properties"
-version = "2.1.1"
+version = "2.1.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e93fcd3157766c0c8da2f8cff6ce651a31f0810eaa1c51ec363ef790bbb5fb99"
+checksum = "020bfc02fe870ec3a66d93e677ccca0562506e5872c650f893269e08615d74ec"
 dependencies = [
  "icu_collections",
  "icu_locale_core",
@@ -1951,9 +1950,9 @@ dependencies = [
 
 [[package]]
 name = "icu_properties_data"
-version = "2.1.1"
+version = "2.1.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "02845b3647bb045f1100ecd6480ff52f34c35f82d9880e029d329c21d1054899"
+checksum = "616c294cf8d725c6afcd8f55abc17c56464ef6211f9ed59cccffe534129c77af"
 
 [[package]]
 name = "icu_provider"
@@ -2702,6 +2701,7 @@ dependencies = [
  "log",
  "pecos-core",
  "pecos-cppsparsesim",
+ "pecos-decoders",
  "pecos-engines",
  "pecos-hugr-qis",
  "pecos-llvm",
@@ -2711,7 +2711,6 @@ dependencies = [
  "pecos-programs",
  "pecos-qasm",
  "pecos-qis-core",
- "pecos-qis-ffi-types",
  "pecos-qis-selene",
  "pecos-qsim",
  "pecos-quest",
@@ -2855,11 +2854,8 @@ name = "pecos-llvm"
 version = "0.1.1"
 dependencies = [
  "inkwell 0.7.1",
- "log",
  "pecos-core",
  "pecos-llvm-utils",
- "regex",
- "thiserror 2.0.17",
 ]
 
 [[package]]
@@ -2868,7 +2864,6 @@ version = "0.1.1"
 dependencies = [
  "clap",
  "dirs",
- "flate2",
  "reqwest",
  "sevenz-rust",
  "sha2",
@@ -3029,7 +3024,6 @@ name = "pecos-quest"
 version = "0.1.1"
 dependencies = [
  "approx 0.5.1",
- "cc",
  "cxx",
  "cxx-build",
  "env_logger",
@@ -3803,9 +3797,9 @@ dependencies = [
 
 [[package]]
 name = "reqwest"
-version = "0.12.24"
+version = "0.12.25"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9d0946410b9f7b082a427e4ef5c8ff541a88b357bc6c637c40db3a68ac70a36f"
+checksum = "b6eff9328d40131d43bd911d42d79eb6a47312002a4daefc9e37f17e74a7701a"
 dependencies = [
  "base64",
  "bytes",
@@ -3855,15 +3849,6 @@ dependencies = [
  "windows-sys 0.52.0",
 ]
 
-[[package]]
-name = "romu"
-version = "0.7.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bd731b0b5899480a0d7cf3b9ce744a92793c98c092f9d6f0a8133ef9fe8024b1"
-dependencies = [
- "getrandom 0.3.4",
-]
-
 [[package]]
 name = "ron"
 version = "0.12.0"
diff --git a/Cargo.toml b/Cargo.toml
index ffa387a38..9c9e31439 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -8,35 +8,6 @@ members = [
     "crates/benchmarks",
 ]
 
-# By default, exclude decoder crates from workspace operations to avoid heavy C++ dependencies
-default-members = [
-    "crates/pecos-core",
-    "crates/pecos-num",
-    "crates/pecos-engines",
-    "crates/pecos-qsim",
-    "crates/pecos-qasm",
-    "crates/pecos-phir",
-    "crates/pecos-qec",
-    "crates/pecos-rng",
-    "crates/pecos",
-    "crates/pecos-cli",
-    "crates/pecos-quest",
-    "python/pecos-rslib",
-    "crates/benchmarks",
-]
-
-# The decoder crates are external and have heavy C++ dependencies.
-# To work with decoders:
-#
-# Build specific decoders:
-#   cargo build --package pecos-decoders --features "ldpc"
-#
-# Build all decoders:
-#   cargo build --package pecos-decoders --all-features
-#
-# Build everything including decoders:
-#   cargo build --workspace
-
 [workspace.package]
 version = "0.1.1"
 edition = "2024"
@@ -183,6 +154,12 @@ opt-level = 3          # Maximum optimization
 lto = true             # Link-time optimization (same as "fat")
 codegen-units = 1      # Single codegen unit for better optimization
 
+# Native profile: release + CPU-specific optimizations
+# Use with: cargo build --profile native
+# Build scripts detect this via PROFILE=native env var and add -march=native for C++ code
+[profile.native]
+inherits = "release"
+
 [workspace.lints.clippy]
 # For more details see: https://doc.rust-lang.org/clippy/lints.html
 suspicious = { level = "warn", priority = -1 }
diff --git a/Makefile b/Makefile
index 92a685195..f37c41c42 100644
--- a/Makefile
+++ b/Makefile
@@ -4,6 +4,13 @@
 PYTHON := $(shell which python 2>/dev/null || which python3 2>/dev/null)
 SHELL=bash
 
+# FFI crates that should be excluded from workspace-wide cargo commands
+# These are built separately by maturin (Python), Julia, and Go tooling
+FFI_CRATES := pecos-rslib pecos-julia-ffi pecos-go-ffi
+
+# Generate --exclude flags for cargo commands
+CARGO_EXCLUDE_FFI := $(foreach crate,$(FFI_CRATES),--exclude $(crate))
+
 # LLVM Configuration
 # LLVM is automatically detected by build.rs files using pecos-llvm-utils
 # No manual configuration needed!
@@ -66,73 +73,101 @@ else
     endif
 endif
 
-.PHONY: build
-build: installreqs ## Compile and install for development
-	@$(SETUP_LLVM); $(UNSET_CONDA) cd python/pecos-rslib/ && uv run maturin develop --uv
-	@$(UNSET_CONDA) uv pip install -e "./python/quantum-pecos[all]"
-	@if command -v julia >/dev/null 2>&1; then \
-		echo "Julia detected, building Julia FFI library..."; \
-		$(SETUP_LLVM); cd julia/pecos-julia-ffi && cargo build; \
-		echo "Julia FFI library built successfully"; \
-	else \
-		echo "Julia not detected, skipping Julia build"; \
-	fi
-	@if command -v go >/dev/null 2>&1; then \
-		echo "Go detected, building Go FFI library..."; \
-		cd go/pecos-go-ffi && cargo build; \
-		echo "Go FFI library built successfully"; \
-	else \
-		echo "Go not detected, skipping Go build"; \
-	fi
-
-.PHONY: build-basic
-build-basic: installreqs ## Compile and install for development but do not include install extras
-	@$(SETUP_LLVM); $(UNSET_CONDA) cd python/pecos-rslib/ && uv run maturin develop --uv
-	@$(UNSET_CONDA) uv pip install -e ./python/quantum-pecos
+# Build profile configuration
+# Usage: make build PROFILE=debug|release|native (default: debug)
+# Build scripts detect the profile via Cargo's PROFILE env var.
+PROFILE ?= debug
+
+# Profile-specific Cargo/Maturin settings
+# - debug: uses default cargo (debug) profile - fast compile, no optimization
+# - release: uses --release flag - full optimization
+# - native: uses --profile native (custom profile inheriting from release) + CPU-specific opts
+#
+# For native profile, we also pass -C target-cpu=native to Rust via RUSTFLAGS.
+# Build scripts detect PROFILE=native and add -march=native for C++ code.
+ifeq ($(PROFILE),native)
+    MATURIN_RELEASE_FLAG := --release
+    CARGO_PROFILE_FLAG := --profile native
+    RUSTFLAGS_EXTRA := -C target-cpu=native
+    PROFILE_DESC := native (release + CPU optimizations)
+else ifeq ($(PROFILE),release)
+    MATURIN_RELEASE_FLAG := --release
+    CARGO_PROFILE_FLAG := --release
+    RUSTFLAGS_EXTRA :=
+    PROFILE_DESC := release (optimized)
+else
+    # debug profile (default)
+    MATURIN_RELEASE_FLAG :=
+    CARGO_PROFILE_FLAG :=
+    RUSTFLAGS_EXTRA :=
+    PROFILE_DESC := debug (fast compile, unoptimized)
+endif
 
-.PHONY: build-release
-build-release: installreqs ## Build a faster version of binaries
-	@$(SETUP_LLVM); $(UNSET_CONDA) cd python/pecos-rslib/ && uv run maturin develop --uv --release
-	@$(UNSET_CONDA) uv pip install -e "./python/quantum-pecos[all]"
+# Helper to build FFI crates with the correct profile
+# Build scripts detect profile via Cargo's PROFILE env var
+define BUILD_FFI_CRATES
 	@if command -v julia >/dev/null 2>&1; then \
-		echo "Julia detected, building Julia FFI library (release)..."; \
-		cd julia/pecos-julia-ffi && cargo build --release; \
+		echo "Julia detected, building Julia FFI library ($(PROFILE))..."; \
+		cd julia/pecos-julia-ffi && \
+		RUSTFLAGS="$$RUSTFLAGS $(RUSTFLAGS_EXTRA)" \
+		cargo build $(CARGO_PROFILE_FLAG); \
 		echo "Julia FFI library built successfully"; \
 	else \
 		echo "Julia not detected, skipping Julia build"; \
 	fi
 	@if command -v go >/dev/null 2>&1; then \
-		echo "Go detected, building Go FFI library (release)..."; \
-		cd go/pecos-go-ffi && cargo build --release; \
+		echo "Go detected, building Go FFI library ($(PROFILE))..."; \
+		cd go/pecos-go-ffi && \
+		RUSTFLAGS="$$RUSTFLAGS $(RUSTFLAGS_EXTRA)" \
+		cargo build $(CARGO_PROFILE_FLAG); \
 		echo "Go FFI library built successfully"; \
 	else \
 		echo "Go not detected, skipping Go build"; \
 	fi
+endef
 
-.PHONY: build-native
-build-native: installreqs ## Build a faster version of binaries with native CPU optimization
-	@$(UNSET_CONDA) cd python/pecos-rslib/ && RUSTFLAGS='-C target-cpu=native' \
-	uv run maturin develop --uv --release
+.PHONY: build
+build: installreqs ## Build PECOS (use PROFILE=debug|release|native, default: debug)
+	@echo "Building with profile: $(PROFILE_DESC)"
+	@$(SETUP_LLVM); $(UNSET_CONDA) cd python/pecos-rslib/ && \
+		RUSTFLAGS="$$RUSTFLAGS $(RUSTFLAGS_EXTRA)" \
+		uv run maturin develop --uv $(MATURIN_RELEASE_FLAG)
 	@$(UNSET_CONDA) uv pip install -e "./python/quantum-pecos[all]"
+	$(BUILD_FFI_CRATES)
 
 .PHONY: build-cuda
-build-cuda: installreqs ## Compile and install for development with CUDA support
-	@$(UNSET_CONDA) cd python/pecos-rslib/ && uv run maturin develop --uv
+build-cuda: installreqs ## Build PECOS with CUDA support (use PROFILE=debug|release|native, default: debug)
+	@echo "Building with CUDA support, profile: $(PROFILE_DESC)"
+	@$(SETUP_LLVM); $(UNSET_CONDA) cd python/pecos-rslib/ && \
+		RUSTFLAGS="$$RUSTFLAGS $(RUSTFLAGS_EXTRA)" \
+		uv run maturin develop --uv $(MATURIN_RELEASE_FLAG)
 	@$(UNSET_CONDA) uv pip install -e "./python/quantum-pecos[all,cuda]"
-	@if command -v julia >/dev/null 2>&1; then \
-		echo "Julia detected, building Julia FFI library..."; \
-		cd julia/pecos-julia-ffi && cargo build; \
-		echo "Julia FFI library built successfully"; \
-	else \
-		echo "Julia not detected, skipping Julia build"; \
-	fi
-	@if command -v go >/dev/null 2>&1; then \
-		echo "Go detected, building Go FFI library..."; \
-		cd go/pecos-go-ffi && cargo build; \
-		echo "Go FFI library built successfully"; \
-	else \
-		echo "Go not detected, skipping Go build"; \
-	fi
+	$(BUILD_FFI_CRATES)
+
+# Convenience aliases for common build profiles
+.PHONY: build-debug
+build-debug: ## Alias for: make build PROFILE=debug
+	@$(MAKE) build PROFILE=debug
+
+.PHONY: build-release
+build-release: ## Alias for: make build PROFILE=release
+	@$(MAKE) build PROFILE=release
+
+.PHONY: build-native
+build-native: ## Alias for: make build PROFILE=native
+	@$(MAKE) build PROFILE=native
+
+.PHONY: build-cuda-debug
+build-cuda-debug: ## Alias for: make build-cuda PROFILE=debug
+	@$(MAKE) build-cuda PROFILE=debug
+
+.PHONY: build-cuda-release
+build-cuda-release: ## Alias for: make build-cuda PROFILE=release
+	@$(MAKE) build-cuda PROFILE=release
+
+.PHONY: build-cuda-native
+build-cuda-native: ## Alias for: make build-cuda PROFILE=native
+	@$(MAKE) build-cuda PROFILE=native
 
 # Documentation
 # -------------
@@ -170,34 +205,55 @@ PECOS_QUEST_FEATURES_NO_GPU = $(shell cargo metadata --no-deps --format-version
 
 # When CUDA is not available, we check all packages with all their features except GPU features
 # This is done by checking packages separately
+# FFI crates are checked separately to avoid redundant compilation in workspace builds
 .PHONY: check
 check:  ## Run cargo check (with GPU features only if CUDA available)
 	@if [ "$(CUDA_AVAILABLE)" = "no" ]; then \
 		echo "CUDA not detected - checking all features except GPU"; \
-		echo "Checking workspace packages (excluding those with GPU features)..."; \
-		cargo check --workspace --exclude pecos --exclude pecos-quest --all-targets --all-features; \
+		echo "Checking workspace packages (excluding FFI crates and those with GPU features)..."; \
+		cargo check --workspace $(CARGO_EXCLUDE_FFI) --exclude pecos --exclude pecos-quest --all-targets --all-features; \
 		echo "Checking pecos with all features except gpu..."; \
 		cargo check -p pecos --all-targets --features "$(PECOS_FEATURES_NO_GPU)"; \
 		echo "Checking pecos-quest with all features except gpu/cuda..."; \
 		cargo check -p pecos-quest --all-targets --features "$(PECOS_QUEST_FEATURES_NO_GPU)"; \
 	else \
 		echo "CUDA detected - checking with all features"; \
-		cargo check --workspace --all-targets --all-features; \
+		cargo check --workspace $(CARGO_EXCLUDE_FFI) --all-targets --all-features; \
+	fi
+	@echo "Checking pecos-rslib..."
+	@cargo check -p pecos-rslib --all-targets --all-features
+	@if command -v julia >/dev/null 2>&1; then \
+		echo "Checking pecos-julia-ffi..."; \
+		cargo check -p pecos-julia-ffi --all-targets --all-features; \
+	fi
+	@if command -v go >/dev/null 2>&1; then \
+		echo "Checking pecos-go-ffi..."; \
+		cargo check -p pecos-go-ffi --all-targets --all-features; \
 	fi
 
 .PHONY: clippy
 clippy:  ## Run cargo clippy (with GPU features only if CUDA available)
 	@if [ "$(CUDA_AVAILABLE)" = "no" ]; then \
 		echo "CUDA not detected - running clippy on all features except GPU"; \
-		echo "Running clippy on workspace packages (excluding those with GPU features)..."; \
-		cargo clippy --workspace --exclude pecos --exclude pecos-quest --all-targets --all-features -- -D warnings; \
+		echo "Running clippy on workspace packages (excluding FFI crates and those with GPU features)..."; \
+		cargo clippy --workspace $(CARGO_EXCLUDE_FFI) --exclude pecos --exclude pecos-quest --all-targets --all-features -- -D warnings; \
 		echo "Running clippy on pecos with all features except gpu..."; \
 		cargo clippy -p pecos --all-targets --features "$(PECOS_FEATURES_NO_GPU)" -- -D warnings; \
 		echo "Running clippy on pecos-quest with all features except gpu/cuda..."; \
 		cargo clippy -p pecos-quest --all-targets --features "$(PECOS_QUEST_FEATURES_NO_GPU)" -- -D warnings; \
 	else \
 		echo "CUDA detected - running clippy with all features"; \
-		cargo clippy --workspace --all-targets --all-features -- -D warnings; \
+		cargo clippy --workspace $(CARGO_EXCLUDE_FFI) --all-targets --all-features -- -D warnings; \
+	fi
+	@echo "Running clippy on pecos-rslib..."
+	@cargo clippy -p pecos-rslib --all-targets --all-features -- -D warnings
+	@if command -v julia >/dev/null 2>&1; then \
+		echo "Running clippy on pecos-julia-ffi..."; \
+		cargo clippy -p pecos-julia-ffi --all-targets --all-features -- -D warnings; \
+	fi
+	@if command -v go >/dev/null 2>&1; then \
+		echo "Running clippy on pecos-go-ffi..."; \
+		cargo clippy -p pecos-go-ffi --all-targets --all-features -- -D warnings; \
 	fi
 
 .PHONY: fmt
@@ -238,15 +294,25 @@ lint-fix:  ## Fix all auto-fixable linting issues (Rust, Python, Julia)
 	cargo fmt --all
 	@if [ "$(CUDA_AVAILABLE)" = "no" ]; then \
 		echo "CUDA not detected - running clippy fix on all features except GPU"; \
-		echo "Fixing workspace packages (excluding those with GPU features)..."; \
-		cargo clippy --fix --workspace --exclude pecos --exclude pecos-quest --all-targets --all-features --allow-staged --allow-dirty; \
+		echo "Fixing workspace packages (excluding FFI crates and those with GPU features)..."; \
+		cargo clippy --fix --workspace $(CARGO_EXCLUDE_FFI) --exclude pecos --exclude pecos-quest --all-targets --all-features --allow-staged --allow-dirty; \
 		echo "Fixing pecos with all features except gpu..."; \
 		cargo clippy --fix -p pecos --all-targets --features "$(PECOS_FEATURES_NO_GPU)" --allow-staged --allow-dirty; \
 		echo "Fixing pecos-quest with all features except gpu/cuda..."; \
 		cargo clippy --fix -p pecos-quest --all-targets --features "$(PECOS_QUEST_FEATURES_NO_GPU)" --allow-staged --allow-dirty; \
 	else \
 		echo "CUDA detected - running clippy fix with all features"; \
-		cargo clippy --fix --workspace --all-targets --all-features --allow-staged --allow-dirty; \
+		cargo clippy --fix --workspace $(CARGO_EXCLUDE_FFI) --all-targets --all-features --allow-staged --allow-dirty; \
+	fi
+	@echo "Fixing pecos-rslib..."
+	@cargo clippy --fix -p pecos-rslib --all-targets --all-features --allow-staged --allow-dirty
+	@if command -v julia >/dev/null 2>&1; then \
+		echo "Fixing pecos-julia-ffi..."; \
+		cargo clippy --fix -p pecos-julia-ffi --all-targets --all-features --allow-staged --allow-dirty; \
+	fi
+	@if command -v go >/dev/null 2>&1; then \
+		echo "Fixing pecos-go-ffi..."; \
+		cargo clippy --fix -p pecos-go-ffi --all-targets --all-features --allow-staged --allow-dirty; \
 	fi
 	@echo ""
 	@echo "Running pre-commit fixes..."
@@ -276,12 +342,12 @@ lint-fix:  ## Fix all auto-fixable linting issues (Rust, Python, Julia)
 rstest:  ## Run Rust tests (with GPU features only if CUDA available)
 	@if [ "$(CUDA_AVAILABLE)" = "no" ]; then \
 		echo "CUDA not detected - testing all features except GPU"; \
-		$(ADD_LLVM_TO_PATH) cargo test --workspace --release --exclude pecos-quest --exclude pecos-decoders --features llvm; \
+		$(ADD_LLVM_TO_PATH) cargo test --workspace --release $(CARGO_EXCLUDE_FFI) --exclude pecos-quest --exclude pecos-decoders --features llvm; \
 		$(ADD_LLVM_TO_PATH) cargo test -p pecos-quest --release --features cpu; \
 		$(ADD_LLVM_TO_PATH) cargo test -p pecos-decoders --release --all-features; \
 	else \
 		echo "CUDA detected - testing with all features including GPU"; \
-		$(ADD_LLVM_TO_PATH) cargo test --workspace --release --exclude pecos-quest --exclude pecos-decoders --features llvm; \
+		$(ADD_LLVM_TO_PATH) cargo test --workspace --release $(CARGO_EXCLUDE_FFI) --exclude pecos-quest --exclude pecos-decoders --features llvm; \
 		$(ADD_LLVM_TO_PATH) cargo test -p pecos-quest --release --all-features; \
 		$(ADD_LLVM_TO_PATH) cargo test -p pecos-decoders --release --all-features; \
 	fi
@@ -290,12 +356,12 @@ rstest:  ## Run Rust tests (with GPU features only if CUDA available)
 rstest-all:  ## Run Rust tests with all features (including GPU if CUDA available)
 	@if [ "$(CUDA_AVAILABLE)" = "no" ]; then \
 		echo "CUDA not detected - testing all features except GPU"; \
-		$(ADD_LLVM_TO_PATH) cargo test --workspace --exclude pecos-quest --exclude pecos-decoders --features llvm; \
+		$(ADD_LLVM_TO_PATH) cargo test --workspace $(CARGO_EXCLUDE_FFI) --exclude pecos-quest --exclude pecos-decoders --features llvm; \
 		$(ADD_LLVM_TO_PATH) cargo test -p pecos-quest --features cpu; \
 		$(ADD_LLVM_TO_PATH) cargo test -p pecos-decoders --all-features; \
 	else \
 		echo "CUDA detected - testing with all features including GPU"; \
-		$(ADD_LLVM_TO_PATH) cargo test --workspace --exclude pecos-quest --exclude pecos-decoders --features llvm; \
+		$(ADD_LLVM_TO_PATH) cargo test --workspace $(CARGO_EXCLUDE_FFI) --exclude pecos-quest --exclude pecos-decoders --features llvm; \
 		$(ADD_LLVM_TO_PATH) cargo test -p pecos-quest --all-features; \
 		$(ADD_LLVM_TO_PATH) cargo test -p pecos-decoders --all-features; \
 	fi
@@ -705,16 +771,16 @@ pip-install-uv:  ## Install uv using pip and create a venv. (Recommended to inst
 	uv sync
 
 .PHONY: dev
-dev: clean build test  ## Run the typical sequence of commands to check everything is running correctly
+dev: clean build-debug test  ## Run the typical sequence of commands to check everything is running correctly
 
 .PHONY: devl
 devl: dev lint  ## Run the commands to make sure everything runs + lint
 
 .PHONY: devc
-devc: clean build-cuda test  ## Run dev sequence with CUDA support (requires CUDA Toolkit 13)
+devc: clean build-cuda test  ## Run dev sequence with CUDA support (requires CUDA Toolkit)
 
 .PHONY: devcl
-devcl: devc lint  ## Run dev sequence with CUDA support + lint (requires CUDA Toolkit 13)
+devcl: devc lint  ## Run dev sequence with CUDA support + lint (requires CUDA Toolkit)
 
 # Help
 # ----
@@ -726,7 +792,7 @@ help:  ## Show the help menu
 	@grep -E '^[a-z.A-Z_-]+:.*?## .*$$' $(MAKEFILE_LIST) | awk 'BEGIN {FS = ":.*?## "}; {printf "  \033[36m%-22s\033[0m %s\n", $$1, $$2}'
 	@echo ""
 	@echo "Note: Julia and Go support is automatically detected."
-	@echo "  - 'make build' will also build Julia/Go FFI if they are installed"
+	@echo "  - 'make build-debug' will also build Julia/Go FFI if they are installed"
 	@echo "  - 'make test' will also run Julia/Go tests if they are installed"
 	@echo "  - 'make lint' checks code quality; 'make lint-fix' fixes issues"
 	@echo "  - Use 'make julia-info' or 'make go-info' for more information"
diff --git a/crates/benchmarks/Cargo.toml b/crates/benchmarks/Cargo.toml
index 342281560..7c8213a48 100644
--- a/crates/benchmarks/Cargo.toml
+++ b/crates/benchmarks/Cargo.toml
@@ -17,7 +17,6 @@ rand.workspace = true
 rand_chacha.workspace = true
 rand_xoshiro.workspace = true
 wyrand.workspace = true
-romu.workspace = true
 wide.workspace = true
 
 [[bench]]
diff --git a/crates/pecos-cppsparsesim/build.rs b/crates/pecos-cppsparsesim/build.rs
index ee9f968bd..3214e1c06 100644
--- a/crates/pecos-cppsparsesim/build.rs
+++ b/crates/pecos-cppsparsesim/build.rs
@@ -1,16 +1,77 @@
+use std::env;
+
+/// Get the build profile from Cargo's environment
+/// Returns "debug", "release", or "native"
+///
+/// Cargo sets PROFILE env var during build script execution:
+/// - "debug" -> no C++ optimization, fast compile
+/// - "release" -> full optimization (-O3)
+/// - "native" -> full optimization + CPU-specific (-O3 -march=native)
+fn get_build_profile() -> String {
+    match env::var("PROFILE").as_deref() {
+        Ok("release") => "release".to_string(),
+        Ok("native") => "native".to_string(),
+        _ => "debug".to_string(), // debug or anything else
+    }
+}
+
+/// Apply profile optimization flags to a `cc::Build`
+fn apply_profile_flags(build: &mut cc::Build, target: &str) {
+    let profile = get_build_profile();
+
+    if target.contains("windows") {
+        // MSVC optimization flags
+        match profile.as_str() {
+            "native" => {
+                build.opt_level(2); // /O2
+                build.flag_if_supported("/arch:AVX2"); // Common native optimization for modern CPUs
+            }
+            "release" => {
+                build.opt_level(2); // /O2
+            }
+            _ => {
+                // Dev: use default (no optimization)
+            }
+        }
+    } else {
+        // GCC/Clang optimization flags
+        match profile.as_str() {
+            "native" => {
+                build.flag_if_supported("-O3");
+                build.flag_if_supported("-march=native");
+            }
+            "release" => {
+                build.flag_if_supported("-O3");
+            }
+            _ => {
+                // Dev: no optimization for fastest compile
+                build.flag_if_supported("-O0");
+            }
+        }
+    }
+}
+
 fn main() {
     // Build C++ source files
     let mut build = cc::Build::new();
+
+    // Use C++14 or newer to avoid issues with older cross-compilers
+    // that don't fully support C++11 type traits like is_trivially_move_constructible
+    let target = env::var("TARGET").unwrap_or_default();
+
+    // On macOS, explicitly use system clang to ensure SDK paths are correct.
+    // The PECOS LLVM clang may be in PATH but doesn't have SDK headers configured,
+    // causing "math.h file not found" errors during compilation.
+    if target.contains("darwin") && env::var("CXX").is_err() && env::var("CC").is_err() {
+        build.compiler("/usr/bin/clang++");
+    }
+
     build
         .cpp(true)
         .file("src/sparsesim.cpp")
         .file("src/cxx_shim.cpp")
         .include("src");
 
-    // Use C++14 or newer to avoid issues with older cross-compilers
-    // that don't fully support C++11 type traits like is_trivially_move_constructible
-    let target = std::env::var("TARGET").unwrap_or_default();
-
     // For cross-compilation (especially aarch64), we need at least C++14
     // to ensure type traits are available
     if target.contains("aarch64") || target.contains("arm") {
@@ -29,12 +90,21 @@ fn main() {
         build.flag("/Z7");
     }
 
+    // Apply PECOS profile optimization flags
+    apply_profile_flags(&mut build, &target);
+
     build.compile("sparsesim");
 
     // Generate cxx bridge code with same C++ standard
     let mut bridge = cxx_build::bridge("src/lib.rs");
     bridge.file("src/cxx_shim.cpp");
 
+    // On macOS, explicitly use system clang to ensure SDK paths are correct.
+    // The PECOS LLVM clang may be in PATH but doesn't have SDK headers configured.
+    if target.contains("darwin") && env::var("CXX").is_err() && env::var("CC").is_err() {
+        bridge.compiler("/usr/bin/clang++");
+    }
+
     // Match the same C++ standard for cxx bridge
     if target.contains("aarch64") || target.contains("arm") {
         if bridge.is_flag_supported("-std=c++17").unwrap_or(false) {
@@ -57,6 +127,9 @@ fn main() {
         bridge.flag("/Z7");
     }
 
+    // Apply PECOS profile optimization flags to bridge
+    apply_profile_flags(&mut bridge, &target);
+
     bridge.compile("cppsparsesim-bridge");
 
     // On macOS, link against the system C++ library from dyld shared cache
diff --git a/crates/pecos-ldpc-decoders/build_ldpc.rs b/crates/pecos-ldpc-decoders/build_ldpc.rs
index 2d76ff1c9..c82734e19 100644
--- a/crates/pecos-ldpc-decoders/build_ldpc.rs
+++ b/crates/pecos-ldpc-decoders/build_ldpc.rs
@@ -8,6 +8,21 @@ use std::env;
 use std::fs;
 use std::path::{Path, PathBuf};
 
+/// Get the build profile from Cargo's environment
+/// Returns "debug", "release", or "native"
+///
+/// Cargo sets PROFILE env var during build script execution:
+/// - "debug" -> no C++ optimization, fast compile
+/// - "release" -> full optimization (-O3)
+/// - "native" -> full optimization + CPU-specific (-O3 -march=native)
+fn get_build_profile() -> String {
+    match env::var("PROFILE").as_deref() {
+        Ok("release") => "release".to_string(),
+        Ok("native") => "native".to_string(),
+        _ => "debug".to_string(), // debug or anything else
+    }
+}
+
 /// Main build function for LDPC
 pub fn build() -> Result<()> {
     // Tell Cargo when to rerun this build script
@@ -236,6 +251,16 @@ fn build_cxx_bridge(ldpc_dir: &Path) -> Result<()> {
 
     // Build the cxx bridge first to generate headers
     let mut build = cxx_build::bridge("src/bridge.rs");
+
+    let target = env::var("TARGET").unwrap_or_default();
+
+    // On macOS, explicitly use system clang to ensure SDK paths are correct.
+    // The PECOS LLVM clang may be in PATH but doesn't have SDK headers configured,
+    // causing "math.h file not found" errors during compilation.
+    if target.contains("darwin") && env::var("CXX").is_err() && env::var("CC").is_err() {
+        build.compiler("/usr/bin/clang++");
+    }
+
     build
         .file("src/bridge.cpp")
         .include(&src_cpp_dir)
@@ -247,7 +272,6 @@ fn build_cxx_bridge(ldpc_dir: &Path) -> Result<()> {
 
     // Use C++17 when available, fall back to C++14 for older compilers
     // This helps with cross-compilation where older toolchains may not fully support C++17
-    let target = env::var("TARGET").unwrap_or_default();
     if target.contains("aarch64") || target.contains("arm") {
         // For ARM targets, check what's supported
         if build.is_flag_supported("-std=c++17").unwrap_or(false) {
@@ -263,19 +287,26 @@ fn build_cxx_bridge(ldpc_dir: &Path) -> Result<()> {
     // Report ccache/sccache configuration
     report_cache_config();
 
-    // Use different optimization levels for debug vs release builds
-    if cfg!(debug_assertions) {
-        build.flag_if_supported("-O0"); // No optimization for faster compilation
-        build.flag_if_supported("-g"); // Include debug symbols
-    } else {
-        build.flag_if_supported("-O3"); // Full optimization for release
-    }
-
-    // Only use -march=native if not cross-compiling and not explicitly disabled
-    if env::var("CARGO_CFG_TARGET_ARCH").ok() == env::var("HOST_ARCH").ok()
-        && env::var("DECODER_DISABLE_NATIVE_ARCH").is_err()
-    {
-        build.flag_if_supported("-march=native");
+    // Use build profile for optimization settings
+    let profile = get_build_profile();
+    match profile.as_str() {
+        "native" => {
+            // Native profile: release optimizations + CPU-specific optimizations
+            build.flag_if_supported("-O3");
+            // Only use -march=native if not cross-compiling
+            if env::var("CARGO_CFG_TARGET_ARCH").ok() == env::var("HOST_ARCH").ok() {
+                build.flag_if_supported("-march=native");
+            }
+        }
+        "release" => {
+            // Release profile: full optimization
+            build.flag_if_supported("-O3");
+        }
+        _ => {
+            // Dev profile: no optimization for faster compilation
+            build.flag_if_supported("-O0");
+            build.flag_if_supported("-g"); // Include debug symbols
+        }
     }
 
     // Suppress warnings from external code
diff --git a/crates/pecos-llvm-utils/Cargo.toml b/crates/pecos-llvm-utils/Cargo.toml
index 689862146..488552a33 100644
--- a/crates/pecos-llvm-utils/Cargo.toml
+++ b/crates/pecos-llvm-utils/Cargo.toml
@@ -19,7 +19,6 @@ path = "src/bin/pecos-llvm.rs"
 clap.workspace = true
 reqwest.workspace = true
 tar.workspace = true
-flate2.workspace = true
 dirs.workspace = true
 xz2.workspace = true
 sevenz-rust.workspace = true
diff --git a/crates/pecos-llvm/Cargo.toml b/crates/pecos-llvm/Cargo.toml
index a7cceae0a..239e3094d 100644
--- a/crates/pecos-llvm/Cargo.toml
+++ b/crates/pecos-llvm/Cargo.toml
@@ -13,9 +13,6 @@ categories.workspace = true
 
 [dependencies]
 pecos-core.workspace = true
-thiserror.workspace = true
-log.workspace = true
-regex.workspace = true
 
 # Inkwell for LLVM IR generation
 [dependencies.inkwell]
diff --git a/crates/pecos-quest/Cargo.toml b/crates/pecos-quest/Cargo.toml
index 3ac9cb0b8..9d07c19b0 100644
--- a/crates/pecos-quest/Cargo.toml
+++ b/crates/pecos-quest/Cargo.toml
@@ -30,7 +30,6 @@ rand_chacha.workspace = true
 [build-dependencies]
 pecos-build-utils.workspace = true
 cxx-build.workspace = true
-cc.workspace = true
 log.workspace = true
 env_logger.workspace = true
 
diff --git a/crates/pecos-quest/build_quest.rs b/crates/pecos-quest/build_quest.rs
index b94f4e7ba..6f272e0dd 100644
--- a/crates/pecos-quest/build_quest.rs
+++ b/crates/pecos-quest/build_quest.rs
@@ -291,6 +291,21 @@ fn generate_quest_header(quest_dir: &Path) -> Result<()> {
     Ok(())
 }
 
+/// Get the build profile from Cargo's environment
+/// Returns "debug", "release", or "native"
+///
+/// Cargo sets PROFILE env var during build script execution:
+/// - "debug" -> no C++ optimization, fast compile
+/// - "release" -> full optimization (-O3)
+/// - "native" -> full optimization + CPU-specific (-O3 -march=native)
+fn get_build_profile() -> String {
+    match env::var("PROFILE").as_deref() {
+        Ok("release") => "release".to_string(),
+        Ok("native") => "native".to_string(),
+        _ => "debug".to_string(), // debug or anything else
+    }
+}
+
 /// Main build function for `QuEST`
 pub fn build() -> Result<()> {
     // Tell Cargo when to rerun this build script
@@ -379,6 +394,14 @@ fn build_cxx_bridge(quest_dir: &Path, out_dir: &Path) {
     // Build the cxx bridge first to generate headers
     let mut build = cxx_build::bridge("src/bridge.rs");
 
+    // On macOS, explicitly use system clang to ensure SDK paths are correct.
+    // The PECOS LLVM clang may be in PATH but doesn't have SDK headers configured,
+    // causing "math.h file not found" errors during compilation.
+    let target = env::var("TARGET").unwrap_or_default();
+    if target.contains("darwin") && env::var("CXX").is_err() && env::var("CC").is_err() {
+        build.compiler("/usr/bin/clang++");
+    }
+
     // Determine if we're building with GPU support
     // Check if the gpu feature is enabled via CARGO_FEATURE_GPU env var
     let gpu_feature_enabled = env::var("CARGO_FEATURE_GPU").is_ok();
@@ -546,12 +569,23 @@ fn build_cxx_bridge(quest_dir: &Path, out_dir: &Path) {
     // This properly handles warning flags without conflicts
     build.warnings(false);
 
-    // Use different optimization levels for debug vs release builds
-    if cfg!(debug_assertions) {
-        build.flag_if_supported("-O0"); // No optimization for faster compilation
-        build.flag_if_supported("-g"); // Include debug symbols
-    } else {
-        build.flag_if_supported("-O3"); // Full optimization for release
+    // Use build profile for optimization settings
+    let profile = get_build_profile();
+    match profile.as_str() {
+        "native" => {
+            // Native profile: release optimizations + CPU-specific optimizations
+            build.flag_if_supported("-O3");
+            build.flag_if_supported("-march=native");
+        }
+        "release" => {
+            // Release profile: full optimization
+            build.flag_if_supported("-O3");
+        }
+        _ => {
+            // Dev profile: no optimization for faster compilation
+            build.flag_if_supported("-O0");
+            build.flag_if_supported("-g"); // Include debug symbols
+        }
     }
 
     // Platform-specific flags
diff --git a/crates/pecos-qulacs/build.rs b/crates/pecos-qulacs/build.rs
index 12f31139c..1d20e1905 100644
--- a/crates/pecos-qulacs/build.rs
+++ b/crates/pecos-qulacs/build.rs
@@ -63,6 +63,21 @@ fn setup_rerun_conditions() {
     println!("cargo:rerun-if-changed=src/qulacs_wrapper.h");
 }
 
+/// Get the build profile from Cargo's environment
+/// Returns "debug", "release", or "native"
+///
+/// Cargo sets PROFILE env var during build script execution:
+/// - "debug" -> no C++ optimization, fast compile
+/// - "release" -> full optimization (-O3)
+/// - "native" -> full optimization + CPU-specific (-O3 -march=native)
+fn get_build_profile() -> String {
+    match env::var("PROFILE").as_deref() {
+        Ok("release") => "release".to_string(),
+        Ok("native") => "native".to_string(),
+        _ => "debug".to_string(), // debug or anything else
+    }
+}
+
 fn download_and_extract_dependencies(out_dir: &Path) -> (PathBuf, PathBuf, PathBuf) {
     // Download all dependencies
     let qulacs_data = download_cached(&qulacs_download_info()).expect("Failed to download Qulacs");
@@ -183,9 +198,24 @@ fn configure_build(
     build.include("src");
     build.include(out_dir);
 
-    // Set compiler flags
+    // Configure the C++ compiler based on platform.
+    // - macOS: MUST use system clang (/usr/bin/clang++) which has proper SDK paths.
+    //   PECOS's bundled clang doesn't have macOS SDK headers configured (missing math.h, etc.)
+    //   and the cc crate will find PECOS clang first if it's in PATH.
+    // - Windows: Use MSVC (default). PECOS's bundled clang-cl is LLVM 14, but MSVC 2022's STL
+    //   requires Clang 19.0.0+ when using clang-cl, causing "STL1000: Unexpected compiler version".
+    // - Linux: Use system GCC (PECOS clang can't find system GCC headers for libstdc++)
+    // Only override if CXX/CC env vars are not already set (allow user override).
+    if env::var("CXX").is_err() && env::var("CC").is_err() && target.contains("darwin") {
+        // On macOS, explicitly use system clang to ensure SDK paths are correct.
+        // The PECOS LLVM clang may be in PATH but doesn't have SDK headers.
+        build.compiler("/usr/bin/clang++");
+    }
+    // On Windows and Linux, use the default compiler (MSVC on Windows, GCC on Linux)
+
+    // Set compiler flags based on platform and compiler
     if is_windows {
-        // Windows-specific settings
+        // MSVC-specific settings
         build.std("c++14");
         // Define Boost exception handling for Windows
         build.define("BOOST_NO_EXCEPTIONS", None);
@@ -207,18 +237,36 @@ fn configure_build(
         build.opt_level(2); // Maximize speed optimization (/O2)
     } else {
         build.flag_if_supported("-std=c++14");
-        build.flag_if_supported("-O3");
-
-        // On macOS with ARM (Apple Silicon), -ffast-math causes issues with Eigen's NEON code
-        // which uses infinity constants. Use a more targeted optimization instead.
-        if target.contains("darwin") && target.contains("aarch64") {
-            // Enable fast math but allow infinity and NaN
-            build.flag_if_supported("-fno-math-errno");
-            build.flag_if_supported("-fno-trapping-math");
-        } else {
-            build.flag_if_supported("-ffast-math");
+
+        // Get build profile for optimization settings
+        let profile = get_build_profile();
+
+        match profile.as_str() {
+            "native" => {
+                // Native profile: release optimizations + CPU-specific optimizations
+                // Use -O3 with workarounds for GCC 11 ICE bugs.
+                build.flag_if_supported("-O3");
+                build.flag_if_supported("-fno-tree-vectorize"); // Disable vectorization that triggers ICE
+                build.flag_if_supported("-march=native"); // CPU-specific optimizations
+            }
+            "release" => {
+                // Release profile: optimized build
+                // Use -O3 with workarounds for GCC 11 ICE bugs.
+                // The ICE occurs in tree-vect-loop.c during auto-vectorization of
+                // complex Boost/Eigen templates. Disabling vectorization prevents the crash.
+                build.flag_if_supported("-O3");
+                build.flag_if_supported("-fno-tree-vectorize"); // Disable vectorization that triggers ICE
+            }
+            _ => {
+                // Dev profile: no optimization flags for fastest compile times
+            }
         }
 
+        // Safe math optimizations (don't cause ICEs, provide modest speedup)
+        // Applied to all profiles
+        build.flag_if_supported("-fno-math-errno");
+        build.flag_if_supported("-fno-trapping-math");
+
         // Silence OpenMP pragma warnings since we intentionally don't use OpenMP
         // PECOS uses thread-level parallelism instead of OpenMP's internal parallelism
         build.flag_if_supported("-Wno-unknown-pragmas");
@@ -229,11 +277,12 @@ fn configure_build(
         build.flag_if_supported("-Wno-unqualified-std-cast-call"); // Qulacs move() warnings
         build.flag_if_supported("-Wno-inconsistent-missing-override"); // Qulacs override warnings
 
-        // On macOS, use the -stdlib=libc++ flag to ensure proper C++ standard library linkage
+        // On macOS, use libc++ (the system default and what PECOS clang expects)
         if target.contains("darwin") {
             build.flag("-stdlib=libc++");
             // Note: Linker flags are passed via cargo:rustc-link-arg below, not here
         }
+        // On Linux, use system default (libstdc++) - no flag needed
     }
 
     // Define preprocessor macros
diff --git a/crates/pecos/Cargo.toml b/crates/pecos/Cargo.toml
index 2c9dc20ca..6f19cf16c 100644
--- a/crates/pecos/Cargo.toml
+++ b/crates/pecos/Cargo.toml
@@ -22,7 +22,7 @@ pecos-engines.workspace = true
 pecos-programs.workspace = true
 pecos-qasm.workspace = true
 pecos-phir-json.workspace = true
-pecos-qis-ffi-types.workspace = true
+#pecos-qis-ffi-types.workspace = true
 pecos-qis-core.workspace = true
 pecos-qis-selene = { workspace = true, optional = true }
 pecos-llvm = { workspace = true, optional = true }
@@ -42,26 +42,36 @@ pecos-qulacs = { workspace = true, optional = true }
 # WebAssembly foreign object support (optional)
 pecos-wasm = { workspace = true, optional = true }
 
+# Decoder backends (optional)
+pecos-decoders = { workspace = true, optional = true }
+
 [features]
-default = ["qasm", "phir", "wasm", "all-simulators"]
+default = ["qasm", "phir", "wasm"]
+
+# Program formats
 qasm = []
-llvm = ["pecos-qis-core/llvm", "pecos-llvm", "pecos-hugr-qis", "pecos-hugr-qis?/llvm"]
 phir = []
-selene = ["pecos-qis-selene"]
 
-# WebAssembly support
+# Heavy external dependencies
+llvm = ["pecos-qis-core/llvm", "pecos-llvm", "pecos-hugr-qis", "pecos-hugr-qis?/llvm"]
+selene = ["pecos-qis-selene"]
 wasm = ["pecos-wasm", "pecos-wasm/wasm"]
 
-# Quantum simulator backends
+# Quantum simulator backends (C++ wrappers)
 cppsparsesim = ["pecos-cppsparsesim"]
 quest = ["pecos-quest"]
 qulacs = ["pecos-qulacs"]
+all-simulators = ["cppsparsesim", "quest", "qulacs"]
 
-# Quest-specific features
+# GPU support
 gpu = ["quest", "pecos-quest/gpu"]
 
-# All simulator backends
-all-simulators = ["cppsparsesim", "quest", "qulacs"]
+# Decoder backends
+ldpc = ["pecos-decoders", "pecos-decoders/ldpc"]
+all-decoders = ["ldpc"]
+
+# Everything
+full = ["all-simulators", "all-decoders", "llvm", "selene", "wasm"]
 
 [dev-dependencies]
 tempfile.workspace = true
@@ -75,5 +85,9 @@ pecos-rng.workspace = true
 log.workspace = true
 serde_json.workspace = true
 
+[[example]]
+name = "quest_example"
+required-features = ["quest"]
+
 [lints]
 workspace = true
diff --git a/crates/pecos/src/lib.rs b/crates/pecos/src/lib.rs
index b157efb31..d00b0f587 100644
--- a/crates/pecos/src/lib.rs
+++ b/crates/pecos/src/lib.rs
@@ -504,6 +504,34 @@ pub mod graph {
     pub use pecos_num::graph::*;
 }
 
+/// Quantum error correction decoders
+///
+/// This module provides decoders for quantum error correction codes.
+///
+/// # Available Decoders (feature-gated)
+///
+/// With `ldpc` feature:
+/// - **`BpOsdDecoder`** - Belief propagation with ordered statistics decoding
+/// - **`BpLsdDecoder`** - Belief propagation with localized statistics decoding
+/// - **`UnionFindDecoder`** - Union-find decoder
+/// - **`BeliefFindDecoder`** - Belief-find decoder
+/// - **`FlipDecoder`** - Flip decoder
+/// - **`MbpDecoder`** - Modified belief propagation decoder
+/// - **`SoftInfoBpDecoder`** - Soft information BP decoder
+///
+/// # Example
+///
+/// ```rust,no_run
+/// # #[cfg(feature = "ldpc")]
+/// # {
+/// use pecos::decoders::{Decoder, BpOsdDecoder};
+/// # }
+/// ```
+#[cfg(any(feature = "ldpc", feature = "all-decoders"))]
+pub mod decoders {
+    pub use pecos_decoders::*;
+}
+
 /// Quantum simulation implementations
 ///
 /// This module provides low-level quantum simulation implementations and utilities
diff --git a/crates/pecos/src/prelude.rs b/crates/pecos/src/prelude.rs
index 2ff1afda2..67a4909af 100644
--- a/crates/pecos/src/prelude.rs
+++ b/crates/pecos/src/prelude.rs
@@ -137,3 +137,11 @@ pub use pecos_qulacs::QulacsStateVec;
 
 #[cfg(feature = "wasm")]
 pub use pecos_wasm::{ForeignObject, WasmForeignObject};
+
+// ============================================================================
+// Decoder support
+// ============================================================================
+
+// Re-export core decoder traits (always available)
+#[cfg(any(feature = "ldpc", feature = "all-decoders"))]
+pub use pecos_decoders::{BatchDecoder, CssDecoder, Decoder, DecoderError, SoftDecoder};
diff --git a/docs/development/DEVELOPMENT.md b/docs/development/DEVELOPMENT.md
index f2ad33d7c..a9a6cf5bc 100644
--- a/docs/development/DEVELOPMENT.md
+++ b/docs/development/DEVELOPMENT.md
@@ -42,9 +42,9 @@ For developers who want to contribute or modify PECOS:
 
 6. Build the project in editable mode
     ```sh
-   make build
+   make build-dev
    ```
-   See other build options in the `Makefile`.
+   Other build options: `make build-release` (optimized), `make build-native` (optimized for your CPU).
 
 7. Run all Python and Rust tests:
    ```sh
diff --git a/pyproject.toml b/pyproject.toml
index dfb4d5b62..b349517b5 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "pecos-workspace"
-version = "0.7.0.dev4"
+version = "0.8.0.dev0"
 dependencies = [
     # Note: guppylang is an optional dependency in quantum-pecos
     # Don't include it here as a direct dependency
diff --git a/python/pecos-rslib/Cargo.toml b/python/pecos-rslib/Cargo.toml
index c28323810..b52c265a7 100644
--- a/python/pecos-rslib/Cargo.toml
+++ b/python/pecos-rslib/Cargo.toml
@@ -24,9 +24,8 @@ default = ["wasm"]
 wasm = ["pecos/wasm"]
 
 [dependencies]
-# Use the pecos metacrate which includes all simulators and runtimes by default
-# Enable llvm and wasm features for full Python functionality
-pecos = { workspace = true, features = ["llvm", "wasm", "selene"] }
+# Use the pecos metacrate with all features needed for Python bindings
+pecos = { workspace = true, features = ["llvm", "wasm", "selene", "all-simulators"] }
 
 pyo3 = { workspace=true, features = ["extension-module", "abi3-py310", "generate-import-lib", "num-complex"] }
 ndarray.workspace = true
diff --git a/python/pecos-rslib/pyproject.toml b/python/pecos-rslib/pyproject.toml
index 95c924d09..f45da10f6 100644
--- a/python/pecos-rslib/pyproject.toml
+++ b/python/pecos-rslib/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "pecos-rslib"
-version = "0.7.0.dev4"
+version = "0.8.0.dev0"
 description = "Rust libary extensions for Python PECOS."
 authors = [
     {name = "The PECOS Developers"},
diff --git a/python/quantum-pecos/pyproject.toml b/python/quantum-pecos/pyproject.toml
index c889fd1b9..33070a107 100644
--- a/python/quantum-pecos/pyproject.toml
+++ b/python/quantum-pecos/pyproject.toml
@@ -15,7 +15,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "quantum-pecos"
-version = "0.7.0.dev4"
+version = "0.8.0.dev0"
 authors = [
     {name = "The PECOS Developers"},
 ]
@@ -28,7 +28,7 @@ requires-python = ">=3.10"
 license = { file = "LICENSE"}
 keywords = ["quantum", "QEC", "simulation", "PECOS"]
 dependencies = [
-    "pecos-rslib==0.7.0.dev4",
+    "pecos-rslib==0.8.0.dev0",
     "phir>=0.3.3",
     "networkx>=2.1.0",
 ]
diff --git a/uv.lock b/uv.lock
index b67a318c6..80add44f1 100644
--- a/uv.lock
+++ b/uv.lock
@@ -1,5 +1,5 @@
 version = 1
-revision = 3
+revision = 2
 requires-python = ">=3.10"
 resolution-markers = [
     "python_full_version >= '3.14'",
@@ -715,30 +715,30 @@ toml = [
 
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+version = "13.1.1"
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