Merge branch 'main' into mkdir

Author: m-philipps

doc/conf.py

@@ -52,6 +52,7 @@
     "numpy": ("https://numpy.org/devdocs/", None),
     "sympy": ("https://docs.sympy.org/latest/", None),
     "python": ("https://docs.python.org/3", None),
+    "pydantic": ("https://docs.pydantic.dev/latest/", None),
 }
 
 # Add any paths that contain templates here, relative to this directory.

petab/__init__.py

@@ -36,7 +36,7 @@ def __getattr__(name):
     return getattr(importlib.import_module("petab.v1"), name)
 
 
-def v1getattr(name, module):
+def _v1getattr(name, module):
     if name not in ("__path__", "__all__"):
         warn(
             f"Accessing `petab.{name}` is deprecated and will be removed in "
@@ -67,7 +67,7 @@ def v1getattr(name, module):
         real_module = importlib.import_module(
             f"petab.v1.{'.'.join(v1_object_parts)}"
         )
-        real_module.__getattr__ = partial(v1getattr, module=real_module)
+        real_module.__getattr__ = partial(_v1getattr, module=real_module)
         sys.modules[module_name] = real_module
     except ModuleNotFoundError:
         pass

pyproject.toml

@@ -65,7 +65,8 @@ doc = [
     # https://github.com/spatialaudio/nbsphinx/issues/687#issuecomment-1339271312
     "ipython>=7.21.0, !=8.7.0",
     "pysb",
-    "antimony>=2.14.0"
+    "antimony>=2.14.0",
+    "sbmlmath>=0.4.0",
 ]
 vis = [
     "matplotlib>=3.6.0",