Merge pull request #427 from PEtab-dev/develop

Release 0.1.7

Author: yannikschaelte

CHANGELOG.md

@@ -2,6 +2,14 @@
 
 ## 0.1 series
 
+### 0.1.7
+
+Documentation:
+
+* Update coverage and links of supporting tools
+* Update explanatory figure
+
+
 ### 0.1.6
 
 Library:

README.md

@@ -28,6 +28,8 @@ for example:
 
   - Specifying multiple simulation condition with potentially shared parameters
 
+![PEtab files](doc/gfx/petab_files.png)
+
 ## Documentation
 
 Documentation of the PEtab data format and Python library is available at
@@ -56,7 +58,8 @@ Where PEtab is supported (in alphabetical order):
   - [dMod](https://github.com/dkaschek/dMod/)
     ([HOWTO](https://github.com/dkaschek/dMod/wiki/Support-for-PEtab))
 
-  - [MEIGO](http://gingproc.iim.csic.es/meigo.html)
+  - [MEIGO](https://github.com/gingproc-IIM-CSIC/MEIGO64)
+    ([HOWTO](https://github.com/gingproc-IIM-CSIC/MEIGO64/tree/master/MEIGO/PEtabMEIGO))
 
   - [parPE](https://github.com/ICB-DCM/parPE/)
 
@@ -82,17 +85,17 @@ different tools, based on passed test cases of the
 | 3  | Numeric observable parameter overrides in measurement table    | +++                  | +--    | +++ | +++  | +++   | --+                   | +++   | +++                    |
 | 4  | Parametric observable parameter overrides in measurement table | +++                  | +--    | +++ | +++  | +++   | --+                   | +++   | +++                    |
 | 5  | Parametric overrides in condition table                        | +++                  | +--    | +++ | +++  | +++   | --+                   | +++   | +++                    |
-| 6  | Time-point specific overrides in the measurement table         | ---                  | ---    | +++ | +++  | ---   | ---                   | ---   | ---                    |
-| 7  | Observable transformations to log10 scale                      | +-+                  | +--    | +++ | ++-  | ++-   | --+                   | +-+   | +-+                    |
-| 8  | Replicate measurements                                         | +++                  | +--    | +++ | +++  | ---   | --+                   | +++   | +++                    |
-| 9  | Pre-equilibration                                              | +++                  | +--    | +++ | +++  | ---   | --+                   | +++   | +++                    |
-| 10 | Partial pre-equilibration                                      | +++                  | ---    | +++ | +++  | ---   | --+                   | +++   | +++                    |
-| 11 | Numeric initial concentration in condition table               | +++                  | +--    | +++ | +++  | ---   | --+                   | +++   | +++                    |
-| 12 | Numeric initial compartment sizes in condition table           | ---                  | +--    | +++ | +++  | ---   | ---                   | ---   | ---                    |
-| 13 | Parametric initial concentrations in condition table           | +++                  | +--    | +++ | +++  | ---   | --+                   | +++   | +++                    |
+| 6  | Time-point specific overrides in the measurement table         | ---                  | ---    | +++ | +++  | +++   | ---                   | ---   | ---                    |
+| 7  | Observable transformations to log10 scale                      | +-+                  | +--    | +++ | ++-  | +++   | --+                   | +-+   | +-+                    |
+| 8  | Replicate measurements                                         | +++                  | +--    | +++ | +++  | +++   | --+                   | +++   | +++                    |
+| 9  | Pre-equilibration                                              | +++                  | +--    | +++ | +++  | +++   | --+                   | +++   | +++                    |
+| 10 | Partial pre-equilibration                                      | +++                  | ---    | +++ | +++  | +++   | --+                   | +++   | +++                    |
+| 11 | Numeric initial concentration in condition table               | +++                  | +--    | +++ | +++  | +++   | --+                   | +++   | +++                    |
+| 12 | Numeric initial compartment sizes in condition table           | ---                  | +--    | +++ | +++  | +++   | ---                   | ---   | ---                    |
+| 13 | Parametric initial concentrations in condition table           | +++                  | +--    | +++ | +++  | +++   | --+                   | +++   | +++                    |
 | 14 | Numeric noise parameter overrides in measurement table         | +++                  | +--    | +++ | +++  | +++   | --+                   | +++   | +++                    |
 | 15 | Parametric noise parameter overrides in measurement table      | +++                  | +--    | +++ | +++  | +++   | --+                   | +++   | +++                    |
-| 16 | Observable transformations to log scale                        | +-+                  | +--    | +++ | ++-  | ++-   | --+                   | +-+   | +-+                    |
+| 16 | Observable transformations to log scale                        | +-+                  | +--    | +++ | ++-  | +++   | --+                   | +-+   | +-+                    |
 
 Legend:
 * First character indicates whether computing simulated data is supported and simulations are correct (+) or not (-).