..

Author: dweindl

petab/v1/calculate.py

@@ -139,6 +139,14 @@ def calculate_residuals_for_table(
             # apply scaling
             observable = observable_df.loc[row[OBSERVABLE_ID]]
             trafo = observable.get(OBSERVABLE_TRANSFORMATION, LIN)
+            # FIXME: for v2, the transformation is part of the noise
+            #  distribution
+            noise_distr = observable.get(NOISE_DISTRIBUTION, NORMAL)
+            if noise_distr.startswith("log-"):
+                trafo = LOG
+            elif noise_distr.startswith("log10-"):
+                trafo = LOG10
+
             simulation = petab.scale(simulation, trafo)
             measurement = petab.scale(measurement, trafo)