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add problem files
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‎doc/examples/other_model_types_problem/petab/conditions.tsv‎

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conditionId
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default

‎doc/examples/other_model_types_problem/petab/dummy.xml‎

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<?xml version="1.0" encoding="UTF-8"?>
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<sbml xmlns="http://www.sbml.org/sbml/level3/version2/core" level="3" version="2">
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<model/>
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</sbml>

‎doc/examples/other_model_types_problem/petab/measurements.tsv‎

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observableId simulationConditionId time measurement
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y default 0.0 0.12573
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y default 0.1 1.9729
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y default 0.2 5.08042
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y default 0.3 7.1399
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y default 0.4 9.38433
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y default 0.5 13.4866
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y default 0.6 17.984
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y default 0.7 21.56208
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y default 0.8 24.25626
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y default 0.9 28.47958
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y default 1.0 34.37673
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y default 1.1 40.79633
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y default 1.2 44.71497
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y default 1.3 53.66621
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y default 1.4 60.07409
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y default 1.5 68.64273
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y default 1.6 77.53574
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y default 1.7 87.1487
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y default 1.8 97.97163
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y default 1.9 109.43751
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y default 2.0 119.87147
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y default 2.1 133.77146
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y default 2.2 144.97481
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y default 2.3 160.08651
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y default 2.4 175.62347
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y default 2.5 190.71901
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y default 2.6 206.7365
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y default 2.7 224.39327
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y default 2.8 243.70227
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y default 2.9 264.2652
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y default 3.0 283.99038
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y default 3.1 306.84582
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y default 3.2 330.08077
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y default 3.3 355.12585
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y default 3.4 380.33466
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y default 3.5 407.23037
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y default 3.6 434.22617
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y default 3.7 464.03539
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y default 3.8 495.54398
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y default 3.9 528.18843
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y default 4.0 558.74093
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y default 4.1 596.21892
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y default 4.2 632.18588
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y default 4.3 669.21631
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y default 4.4 707.78446
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y default 4.5 747.81108
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y default 4.6 791.73802
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y default 4.7 835.97526
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y default 4.8 881.16163
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y default 4.9 927.6601
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y default 5.0 975.35738
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y default 5.1 1024.14668
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y default 5.2 1077.43555
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y default 5.3 1131.94147
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y default 5.4 1185.63164
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y default 5.5 1244.77012
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y default 5.6 1304.10986
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y default 5.7 1365.56104
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y default 5.8 1426.77588
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y default 5.9 1492.3333
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y default 6.0 1559.56356
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y default 6.1 1627.8352
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y default 6.2 1701.77937
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y default 6.3 1772.63909
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y default 6.4 1848.64897
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y default 6.5 1925.36643
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y default 6.6 2006.66347
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y default 6.7 2088.03536
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y default 6.8 2171.19335
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y default 6.9 2254.44149
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y default 7.0 2345.05203
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y default 7.1 2436.33869
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y default 7.2 2529.64396
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y default 7.3 2623.36709
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y default 7.4 2723.54201
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y default 7.5 2820.55457
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y default 7.6 2923.81847
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y default 7.7 3030.50005
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y default 7.8 3137.20905
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y default 7.9 3249.29739
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y default 8.0 3360.18852
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y default 8.1 3474.67181
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y default 8.2 3592.86244
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y default 8.3 3712.74385
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y default 8.4 3835.84232
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y default 8.5 3963.75541
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y default 8.6 4092.46117
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y default 8.7 4224.70956
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y default 8.8 4357.00539
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y default 8.9 4496.63411
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y default 9.0 4634.71261
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y default 9.1 4779.52941
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y default 9.2 4923.40721
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y default 9.3 5071.94952
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y default 9.4 5224.76979
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y default 9.5 5380.40645
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y default 9.6 5537.44101
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y default 9.7 5697.67947
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y default 9.8 5861.01878
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y default 9.9 6028.19348
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y default 10.0 6200.50268

‎doc/examples/other_model_types_problem/petab/observables.tsv‎

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observableId observableFormula noiseFormula
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y k0*time^0 + k1*time^1 + k2*time^2 + k3*time^3 + k4*time^4 + k5*time^5 1

‎doc/examples/other_model_types_problem/petab/parameters.tsv‎

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parameterId parameterScale lowerBound upperBound estimate
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k0 lin 0 100 1
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k1 lin 0 100 1
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k2 lin 0 100 1
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k3 lin 0 100 1
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k4 lin 0 100 1
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k5 lin 0 100 1

‎doc/examples/other_model_types_problem/petab/problem.yaml‎

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format_version: 1
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parameter_file: parameters.tsv
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problems:
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- condition_files:
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- conditions.tsv
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measurement_files:
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- measurements.tsv
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sbml_files:
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- dummy.xml
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observable_files:
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- observables.tsv

‎doc/examples/other_model_types_problem/petab_select/model_space.tsv‎

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model_subspace_id petab_yaml k0 k1 k2 k3 k4 k5
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M ../petab/problem.yaml 0;estimate 0;estimate 0;estimate 0;estimate 0;estimate 0;estimate

‎doc/examples/other_model_types_problem/petab_select/problem.yaml‎

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format_version: 1
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criterion: AIC
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method: backward
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model_space_files:
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- model_space.tsv

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