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Merge pull request #125 from SebastianHollizeck/master
remove the intermediate sample names for refiltering
2 parents ec01c98 + 416a4a6 commit feb4944

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janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/strelka2/strelka2passworkflow.py

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -27,7 +27,7 @@ def version(self):
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def bind_metadata(self):
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self.metadata.version = "0.2"
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self.metadata.dateCreated = date(2019, 10, 11)
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self.metadata.dateUpdated = date(2020, 12, 10)
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self.metadata.dateUpdated = date(2022, 5, 31)
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self.metadata.contributors = ["Sebastian Hollizeck"]
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self.metadata.keywords = [
@@ -146,7 +146,6 @@ def constructor(self):
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"refilterSNVs",
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RefilterStrelka2Calls(
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inputFiles=self.step2.snvs,
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sampleNames=self.sampleNames,
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minAD=self.minAD,
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),
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)
@@ -157,7 +156,6 @@ def constructor(self):
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"refilterINDELs",
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RefilterStrelka2Calls(
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inputFiles=self.step2.indels,
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sampleNames=self.sampleNames,
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minAD=self.minAD,
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),
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)

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