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What is your pypardiso version? Please paste the output of 'conda list' command here (run it in Anaconda prompt). |
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(base) PS C:\Users\Administrator> conda list
# packages in environment at D:\Anaconda3:
#
# Name Version Build Channel
_ipyw_jlab_nb_ext_conf 0.1.0 py39haa95532_0
alabaster 0.7.12 pyhd3eb1b0_0
anaconda-client 1.11.0 py39haa95532_0
anaconda-navigator 2.3.2 py39haa95532_0
anyio 3.5.0 py39haa95532_0
argon2-cffi 21.3.0 pyhd3eb1b0_0
argon2-cffi-bindings 21.2.0 py39h2bbff1b_0
arrow 1.2.3 py39haa95532_0
astroid 2.11.7 py39haa95532_0
atomicwrites 1.4.0 py_0
attrs 21.4.0 pyhd3eb1b0_0
autopep8 1.6.0 pyhd3eb1b0_1
babel 2.9.1 pyhd3eb1b0_0
backcall 0.2.0 pyhd3eb1b0_0
backports 1.1 pyhd3eb1b0_0
backports.functools_lru_cache 1.6.4 pyhd3eb1b0_0
backports.tempfile 1.0 pyhd3eb1b0_1
backports.weakref 1.0.post1 py_1
bcrypt 3.2.0 py39h2bbff1b_1
beautifulsoup4 4.11.1 py39haa95532_0
binaryornot 0.4.4 pyhd3eb1b0_1
black 22.6.0 py39haa95532_0
bleach 4.1.0 pyhd3eb1b0_0
brotlipy 0.7.0 py39h2bbff1b_1003
bzip2 1.0.8 he774522_0
ca-certificates 2022.9.24 h5b45459_0 conda-forge
certifi 2022.9.24 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py39h2bbff1b_0
chardet 4.0.0 py39haa95532_1003
charset-normalizer 2.0.4 pyhd3eb1b0_0
chemicals 1.1.2 pypi_0 pypi
click 8.0.4 py39haa95532_0
cloudpickle 2.0.0 pyhd3eb1b0_0
clyent 1.2.2 py39haa95532_1
colorama 0.4.5 py39haa95532_0
commonmark 0.9.1 pypi_0 pypi
conda 22.9.0 py39hcbf5309_2 conda-forge
conda-build 3.22.0 py39haa95532_0
conda-content-trust 0.1.3 py39haa95532_0
conda-env 2.6.0 haa95532_1
conda-package-handling 1.9.0 py39h8cc25b3_1
conda-repo-cli 1.0.24 py39haa95532_0
conda-token 0.4.0 pyhd3eb1b0_0
conda-verify 3.4.2 py_1
console_shortcut 0.1.1 4
contourpy 1.0.5 pypi_0 pypi
cookiecutter 1.7.3 pyhd3eb1b0_0
cryptography 38.0.1 py39h21b164f_0
cycler 0.11.0 pypi_0 pypi
debugpy 1.5.1 py39hd77b12b_0
decorator 5.1.1 pyhd3eb1b0_0
defusedxml 0.7.1 pyhd3eb1b0_0
diff-match-patch 20200713 pyhd3eb1b0_0
dill 0.3.6 py39haa95532_0
docrep 0.3.2 pypi_0 pypi
docutils 0.18.1 py39haa95532_3
entrypoints 0.4 py39haa95532_0
filelock 3.6.0 pyhd3eb1b0_0
flake8 4.0.1 pyhd3eb1b0_1
fluids 1.0.22 pypi_0 pypi
fonttools 4.38.0 pypi_0 pypi
freetype 2.12.1 ha860e81_0
future 0.18.2 py39haa95532_1
glib 2.69.1 h5dc1a3c_1
glob2 0.7 pyhd3eb1b0_0
gst-plugins-base 1.18.5 h9e645db_0
gstreamer 1.18.5 hd78058f_0
h5py 3.7.0 pypi_0 pypi
icu 58.2 ha925a31_3
idna 3.4 py39haa95532_0
imageio 2.22.2 pypi_0 pypi
imagesize 1.4.1 py39haa95532_0
importlib-metadata 4.11.3 py39haa95532_0
importlib_metadata 4.11.3 hd3eb1b0_0
inflection 0.5.1 py39haa95532_0
intel-openmp 2022.2.0 pypi_0 pypi
intervaltree 3.1.0 pyhd3eb1b0_0
ipykernel 6.15.2 py39haa95532_0
ipython 7.31.1 py39haa95532_1
ipython_genutils 0.2.0 pyhd3eb1b0_1
ipywidgets 7.6.5 pyhd3eb1b0_1
isort 5.9.3 pyhd3eb1b0_0
jedi 0.18.1 py39haa95532_1
jellyfish 0.9.0 py39h2bbff1b_0
jinja2 2.11.3 pyhd3eb1b0_0
jinja2-time 0.2.0 pyhd3eb1b0_3
jpeg 9e h2bbff1b_0
json5 0.9.6 pyhd3eb1b0_0
jsonschema 4.16.0 py39haa95532_0
jupyter_client 7.3.5 py39haa95532_0
jupyter_core 4.11.2 py39haa95532_0
jupyter_server 1.18.1 py39haa95532_0
jupyterlab 3.4.4 py39haa95532_0
jupyterlab_pygments 0.1.2 py_0
jupyterlab_server 2.10.3 pyhd3eb1b0_1
jupyterlab_widgets 1.0.0 pyhd3eb1b0_1
keyring 23.4.0 py39haa95532_0
kiwisolver 1.4.4 pypi_0 pypi
lazy-object-proxy 1.6.0 py39h2bbff1b_0
lerc 3.0 hd77b12b_0
libarchive 3.6.1 hebabd0d_0
libblas 3.9.0 8_mkl conda-forge
libcblas 3.9.0 8_mkl conda-forge
libclang 12.0.0 default_h627e005_2
libdeflate 1.8 h2bbff1b_5
libffi 3.4.2 hd77b12b_4
libiconv 1.16 h2bbff1b_2
liblapack 3.9.0 8_mkl conda-forge
liblief 0.11.5 hd77b12b_1
libogg 1.3.5 h2bbff1b_1
libpng 1.6.37 h2a8f88b_0
libsodium 1.0.18 h62dcd97_0
libspatialindex 1.9.3 h6c2663c_0
libtiff 4.4.0 h8a3f274_2
libvorbis 1.3.7 he774522_0
libwebp 1.2.4 h2bbff1b_0
libwebp-base 1.2.4 h2bbff1b_0
libxml2 2.9.14 h0ad7f3c_0
libxslt 1.1.35 h2bbff1b_0
llvmlite 0.39.1 pypi_0 pypi
lz4-c 1.9.3 h2bbff1b_1
m2-msys2-runtime 2.5.0.17080.65c939c 3
m2-patch 2.7.5 2
m2w64-gcc-libgfortran 5.3.0 6 conda-forge
m2w64-gcc-libs 5.3.0 7 conda-forge
m2w64-gcc-libs-core 5.3.0 7 conda-forge
m2w64-gmp 6.1.0 2 conda-forge
m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge
markupsafe 2.0.1 py39h2bbff1b_0
matplotlib 3.6.1 pypi_0 pypi
matplotlib-inline 0.1.6 py39haa95532_0
mccabe 0.7.0 pyhd3eb1b0_0
menuinst 1.4.19 py39h59b6b97_0
mistune 0.8.4 py39h2bbff1b_1000
mkl 2022.2.1 pypi_0 pypi
mpmath 1.2.1 pypi_0 pypi
msys2-conda-epoch 20160418 1
mypy_extensions 0.4.3 py39haa95532_1
navigator-updater 0.3.0 py39haa95532_0
nbclassic 0.4.8 py39haa95532_0
nbclient 0.5.13 py39haa95532_0
nbconvert 6.4.4 py39haa95532_0
nbformat 5.5.0 py39haa95532_0
nest-asyncio 1.5.5 py39haa95532_0
networkx 2.8.7 pypi_0 pypi
notebook 6.5.2 py39haa95532_0
notebook-shim 0.2.2 py39haa95532_0
numba 0.56.3 pypi_0 pypi
numpy 1.23.4 pypi_0 pypi
numpydoc 1.5.0 py39haa95532_0
openpnm 3.1.0 dev_0 <develop>
openssl 1.1.1s h2bbff1b_0
packaging 21.3 pyhd3eb1b0_0
pandas 1.5.1 pypi_0 pypi
pandocfilters 1.5.0 pyhd3eb1b0_0
paramiko 2.8.1 pyhd3eb1b0_0
parso 0.8.3 pyhd3eb1b0_0
pathlib 1.0.1 pyhd3eb1b0_1
pathspec 0.9.0 py39haa95532_0
pcre 8.45 hd77b12b_0
pexpect 4.8.0 pyhd3eb1b0_3
pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 9.2.0 py39hdc2b20a_1
pip 22.2.2 py39haa95532_0
pkginfo 1.8.3 py39haa95532_0
platformdirs 2.5.2 py39haa95532_0
pluggy 1.0.0 py39haa95532_1
ply 3.11 py39haa95532_0
powershell_shortcut 0.0.1 3
poyo 0.5.0 pyhd3eb1b0_0
prometheus_client 0.14.1 py39haa95532_0
prompt-toolkit 3.0.20 pyhd3eb1b0_0
psutil 5.9.0 py39h2bbff1b_0
ptyprocess 0.7.0 pyhd3eb1b0_2
py-lief 0.11.5 py39hd77b12b_1
pyamg 4.2.3 pypi_0 pypi
pycodestyle 2.8.0 pyhd3eb1b0_0
pycosat 0.6.4 py39h2bbff1b_0
pycparser 2.21 pyhd3eb1b0_0
pydocstyle 6.1.1 pyhd3eb1b0_0
pyflakes 2.4.0 pyhd3eb1b0_0
pygments 2.11.2 pyhd3eb1b0_0
pyjwt 2.4.0 py39haa95532_0
pylint 2.14.5 py39haa95532_0
pyls-spyder 0.4.0 pyhd3eb1b0_0
pynacl 1.5.0 py39h8cc25b3_0
pyopenssl 22.0.0 pyhd3eb1b0_0
pypardiso 0.4.2 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 py39haa95532_0
pyqt 5.15.7 py39hd77b12b_0
pyqt5-sip 12.11.0 py39hd77b12b_0
pyqtwebengine 5.15.7 py39hd77b12b_0
pyrsistent 0.18.0 py39h196d8e1_0
pysocks 1.7.1 py39haa95532_0
python 3.9.13 h6244533_1
python-dateutil 2.8.2 pyhd3eb1b0_0
python-fastjsonschema 2.16.2 py39haa95532_0
python-libarchive-c 2.9 pyhd3eb1b0_1
python-lsp-black 1.2.1 py39haa95532_0
python-lsp-jsonrpc 1.0.0 pyhd3eb1b0_0
python-lsp-server 1.5.0 py39haa95532_0
python-slugify 5.0.2 pyhd3eb1b0_0
python_abi 3.9 2_cp39 conda-forge
pytz 2022.1 py39haa95532_0
pywavelets 1.4.1 pypi_0 pypi
pywin32 302 py39h2bbff1b_2
pywin32-ctypes 0.2.0 py39haa95532_1000
pywinpty 2.0.2 py39h5da7b33_0
pyyaml 6.0 py39h2bbff1b_1
pyzmq 23.2.0 py39hd77b12b_0
qdarkstyle 3.0.2 pyhd3eb1b0_0
qstylizer 0.1.10 pyhd3eb1b0_0
qt-main 5.15.2 he8e5bd7_7
qt-webengine 5.15.9 hb9a9bb5_4
qtawesome 1.0.3 pyhd3eb1b0_0
qtconsole 5.3.2 py39haa95532_0
qtpy 2.2.0 py39haa95532_0
qtwebkit 5.212 h3ad3cdb_4
requests 2.28.1 py39haa95532_0
rich 12.6.0 pypi_0 pypi
rope 0.22.0 pyhd3eb1b0_0
rtree 0.9.7 py39h2eaa2aa_1
ruamel_yaml 0.15.100 py39h2bbff1b_0
scikit-image 0.19.3 pypi_0 pypi
scipy 1.9.3 pypi_0 pypi
send2trash 1.8.0 pyhd3eb1b0_1
setuptools 65.5.0 py39haa95532_0
sip 6.6.2 py39hd77b12b_0
six 1.16.0 pyhd3eb1b0_1
sniffio 1.2.0 py39haa95532_1
snowballstemmer 2.2.0 pyhd3eb1b0_0
sortedcontainers 2.4.0 pyhd3eb1b0_0
soupsieve 2.3.2.post1 py39haa95532_0
sphinx 5.0.2 py39haa95532_0
sphinxcontrib-applehelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-devhelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-htmlhelp 2.0.0 pyhd3eb1b0_0
sphinxcontrib-jsmath 1.0.1 pyhd3eb1b0_0
sphinxcontrib-qthelp 1.0.3 pyhd3eb1b0_0
sphinxcontrib-serializinghtml 1.1.5 pyhd3eb1b0_0
spyder 5.3.3 py39haa95532_0
spyder-kernels 2.3.3 py39haa95532_0
sqlite 3.39.3 h2bbff1b_0
sympy 1.11.1 pypi_0 pypi
tbb 2021.7.0 pypi_0 pypi
terminado 0.13.1 py39haa95532_0
testpath 0.6.0 py39haa95532_0
text-unidecode 1.3 pyhd3eb1b0_0
textdistance 4.2.1 pyhd3eb1b0_0
thermo 0.2.23 pypi_0 pypi
three-merge 0.1.1 pyhd3eb1b0_0
tifffile 2022.10.10 pypi_0 pypi
tinycss 0.4 pyhd3eb1b0_1002
tk 8.6.12 h2bbff1b_0
toml 0.10.2 pyhd3eb1b0_0
tomli 2.0.1 py39haa95532_0
tomlkit 0.11.1 py39haa95532_0
toolz 0.12.0 py39haa95532_0
tornado 6.2 py39h2bbff1b_0
tqdm 4.64.1 py39haa95532_0
traitlets 5.1.1 pyhd3eb1b0_0
transforms3d 0.4.1 pypi_0 pypi
typing-extensions 4.3.0 py39haa95532_0
typing_extensions 4.3.0 py39haa95532_0
tzdata 2022f h04d1e81_0
ujson 5.4.0 py39hd77b12b_0
unidecode 1.2.0 pyhd3eb1b0_0
urllib3 1.26.12 py39haa95532_0
vc 14.2 h21ff451_1
vs2015_runtime 14.27.29016 h5e58377_2
watchdog 2.1.6 py39haa95532_0
wcwidth 0.2.5 pyhd3eb1b0_0
webencodings 0.5.1 py39haa95532_1
websocket-client 0.58.0 py39haa95532_4
whatthepatch 1.0.2 py39haa95532_0
wheel 0.37.1 pyhd3eb1b0_0
widgetsnbextension 3.5.2 py39haa95532_0
win_inet_pton 1.1.0 py39haa95532_0
wincertstore 0.2 py39haa95532_2
winpty 0.4.3 4
wrapt 1.14.1 py39h2bbff1b_0
xz 5.2.6 h8cc25b3_0
yaml 0.2.5 he774522_0
yapf 0.31.0 pyhd3eb1b0_0
zeromq 4.3.4 hd77b12b_0
zipp 3.8.0 py39haa95532_0
zlib 1.2.13 h8cc25b3_0
zstd 1.5.2 h19a0ad4_0
(base) PS C:\Users\Administrator> |
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You have the correct version of CC: @haasad |
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Generally it is not advisable to mix packages from See also haasad/PyPardiso#43 (comment) for a very similar issue with an overloaded base environment |
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Hello, (oscarhx) PS C:\Users\Administrator> conda list
# packages in environment at D:\Anaconda3\envs\oscarhx:
#
# Name Version Build Channel
alabaster 0.7.12 py_0 conda-forge
aom 3.5.0 h63175ca_0 conda-forge
arrow 1.2.3 pyhd8ed1ab_0 conda-forge
astroid 2.12.13 py310h5588dad_0 conda-forge
atomicwrites 1.4.1 pyhd8ed1ab_0 conda-forge
attrs 22.1.0 pyh71513ae_1 conda-forge
autopep8 1.6.0 pyhd8ed1ab_1 conda-forge
babel 2.11.0 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
bcrypt 3.2.2 py310h8d17308_1 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
binaryornot 0.4.4 py_1 conda-forge
black 22.10.0 py310h5588dad_2 conda-forge
bleach 5.0.1 pyhd8ed1ab_0 conda-forge
blosc 1.21.1 h74325e0_3 conda-forge
brotli 1.0.9 hcfcfb64_8 conda-forge
brotli-bin 1.0.9 hcfcfb64_8 conda-forge
brotlipy 0.7.0 py310h8d17308_1005 conda-forge
bzip2 1.0.8 h8ffe710_4 conda-forge
c-blosc2 2.5.0 h183a6f4_0 conda-forge
ca-certificates 2022.9.24 h5b45459_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
certifi 2022.9.24 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py310h628cb3f_2 conda-forge
cfitsio 4.2.0 h9ebe7e4_0 conda-forge
chardet 5.0.0 py310h5588dad_1 conda-forge
charls 2.3.4 h39d44d4_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
chemicals 1.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 win_pyhd8ed1ab_2 conda-forge
cloudpickle 2.2.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
commonmark 0.9.1 py_0 conda-forge
contourpy 1.0.6 py310h232114e_0 conda-forge
cookiecutter 2.1.1 pyh6c4a22f_0 conda-forge
coolprop 6.4.1 py310h00ffb61_6 conda-forge
cryptography 38.0.4 py310h52f42fa_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cytoolz 0.12.0 py310h8d17308_1 conda-forge
dask-core 2022.11.1 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
dav1d 1.0.0 h8ffe710_1 conda-forge
debugpy 1.6.4 py310h00ffb61_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
diff-match-patch 20200713 pyh9f0ad1d_0 conda-forge
dill 0.3.6 pyhd8ed1ab_1 conda-forge
docrep 0.3.2 pyh44b312d_0 conda-forge
docstring-to-markdown 0.10 pyhd8ed1ab_0 conda-forge
docutils 0.19 py310h5588dad_1 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
flake8 5.0.4 pyhd8ed1ab_0 conda-forge
fluids 1.0.21 pyh6c4a22f_0 conda-forge
fonttools 4.38.0 py310h8d17308_1 conda-forge
freetype 2.12.1 h546665d_1 conda-forge
fsspec 2022.11.0 pyhd8ed1ab_0 conda-forge
future 0.18.2 pyhd8ed1ab_6 conda-forge
fuzzywuzzy 0.18.0 pyhd8ed1ab_0 conda-forge
gettext 0.21.1 h5728263_0 conda-forge
giflib 5.2.1 h8d14728_2 conda-forge
glib 2.74.1 h12be248_1 conda-forge
glib-tools 2.74.1 h12be248_1 conda-forge
gst-plugins-base 1.21.2 h001b923_0 conda-forge
gstreamer 1.21.2 h6b5321d_0 conda-forge
h5py 3.7.0 nompi_py310hae7a582_102 conda-forge
hdf5 1.12.2 nompi_h2a0e4a3_100 conda-forge
icu 70.1 h0e60522_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imagecodecs 2022.9.26 py310h99cb1c7_4 conda-forge
imageio 2.22.4 pyhfa7a67d_1 conda-forge
imagesize 1.4.1 pyhd8ed1ab_0 conda-forge
importlib-metadata 5.1.0 pyha770c72_0 conda-forge
importlib_metadata 5.1.0 hd8ed1ab_0 conda-forge
importlib_resources 5.10.0 pyhd8ed1ab_0 conda-forge
inflection 0.5.1 pyh9f0ad1d_0 conda-forge
intel-openmp 2022.2.1 h57928b3_19741 conda-forge
intervaltree 3.0.2 py_0 conda-forge
ipykernel 6.17.1 pyh025b116_0 conda-forge
ipython 7.33.0 py310h5588dad_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
isort 5.10.1 pyhd8ed1ab_0 conda-forge
jaraco.classes 3.2.3 pyhd8ed1ab_0 conda-forge
jedi 0.18.2 pyhd8ed1ab_0 conda-forge
jellyfish 0.9.0 py310h8d17308_2 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
jinja2-time 0.2.0 pyhd8ed1ab_3 conda-forge
jpeg 9e h8ffe710_2 conda-forge
jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge
jupyter_client 7.4.7 pyhd8ed1ab_0 conda-forge
jupyter_core 5.1.0 py310h5588dad_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jxrlib 1.1 h8ffe710_2 conda-forge
keyring 23.11.0 py310h5588dad_0 conda-forge
kiwisolver 1.4.4 py310h232114e_1 conda-forge
krb5 1.19.3 h1176d77_0 conda-forge
lazy-object-proxy 1.8.0 py310h8d17308_0 conda-forge
lcms2 2.14 h90d422f_0 conda-forge
lerc 4.0.0 h63175ca_0 conda-forge
levenshtein 0.20.8 py310h00ffb61_2 conda-forge
libaec 1.0.6 h39d44d4_0 conda-forge
libavif 0.11.1 h8f5c5bc_0 conda-forge
libblas 3.9.0 16_win64_mkl conda-forge
libbrotlicommon 1.0.9 hcfcfb64_8 conda-forge
libbrotlidec 1.0.9 hcfcfb64_8 conda-forge
libbrotlienc 1.0.9 hcfcfb64_8 conda-forge
libcblas 3.9.0 16_win64_mkl conda-forge
libclang 15.0.6 default_h77d9078_0 conda-forge
libclang13 15.0.6 default_h77d9078_0 conda-forge
libcurl 7.86.0 heaf79c2_1 conda-forge
libdeflate 1.14 hcfcfb64_0 conda-forge
libffi 3.4.2 h8ffe710_5 conda-forge
libglib 2.74.1 he8f3873_1 conda-forge
libiconv 1.17 h8ffe710_0 conda-forge
liblapack 3.9.0 16_win64_mkl conda-forge
libogg 1.3.4 h8ffe710_1 conda-forge
libpng 1.6.39 h19919ed_0 conda-forge
libsodium 1.0.18 h8d14728_1 conda-forge
libspatialindex 1.9.3 h39d44d4_4 conda-forge
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m2w64-gcc-libs-core 5.3.0 7 conda-forge
m2w64-gmp 6.1.0 2 conda-forge
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markupsafe 2.1.1 py310h8d17308_2 conda-forge
matplotlib-base 3.6.2 py310h51140c5_0 conda-forge
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mistune 2.0.4 pyhd8ed1ab_0 conda-forge
mkl 2022.1.0 h6a75c08_874 conda-forge
more-itertools 9.0.0 pyhd8ed1ab_0 conda-forge
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msys2-conda-epoch 20160418 1 conda-forge
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nbconvert 7.2.5 pyhd8ed1ab_0 conda-forge
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nbconvert-pandoc 7.2.5 pyhd8ed1ab_0 conda-forge
nbformat 5.7.0 pyhd8ed1ab_0 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
networkx 2.8.8 pyhd8ed1ab_0 conda-forge
numba 0.56.4 py310h19bcfe9_0 conda-forge
numpy 1.23.5 py310h4a8f9c9_0 conda-forge
numpydoc 1.5.0 pyhd8ed1ab_0 conda-forge
openjpeg 2.5.0 hc9384bd_1 conda-forge
openpnm 3.1.0 pyhd8ed1ab_0 conda-forge
openssl 1.1.1s hcfcfb64_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.5.2 py310h1c4a608_0 conda-forge
pandoc 2.19.2 h57928b3_1 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
paramiko 2.12.0 pyhd8ed1ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
partd 1.3.0 pyhd8ed1ab_0 conda-forge
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pcre2 10.40 h17e33f8_0 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.2.0 py310hd4fb230_3 conda-forge
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pip 22.3.1 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
platformdirs 2.5.2 pyhd8ed1ab_1 conda-forge
pluggy 1.0.0 pyhd8ed1ab_5 conda-forge
ply 3.11 py_1 conda-forge
prompt-toolkit 3.0.33 pyha770c72_0 conda-forge
psutil 5.9.4 py310h8d17308_0 conda-forge
pthread-stubs 0.4 hcd874cb_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pyamg 4.2.3 py310hf19232d_2 conda-forge
pycodestyle 2.9.1 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydocstyle 6.1.1 pyhd8ed1ab_0 conda-forge
pyflakes 2.5.0 pyhd8ed1ab_0 conda-forge
pygments 2.13.0 pyhd8ed1ab_0 conda-forge
pylint 2.15.7 pyhd8ed1ab_0 conda-forge
pylint-venv 2.3.0 pyhd8ed1ab_0 conda-forge
pyls-spyder 0.4.0 pyhd8ed1ab_0 conda-forge
pynacl 1.5.0 py310h635b8f1_2 conda-forge
pyopenssl 22.1.0 pyhd8ed1ab_0 conda-forge
pypardiso 0.4.2 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyqt 5.15.7 py310h1fd54f2_2 conda-forge
pyqt5-sip 12.11.0 py310h00ffb61_2 conda-forge
pyqtwebengine 5.15.7 py310h1fd54f2_2 conda-forge
pyrsistent 0.19.2 py310h8d17308_0 conda-forge
pysocks 1.7.1 pyh0701188_6 conda-forge
python 3.10.8 h0269646_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.2 pyhd8ed1ab_0 conda-forge
python-levenshtein 0.20.8 pyhd8ed1ab_0 conda-forge
python-lsp-black 1.2.1 pyhd8ed1ab_0 conda-forge
python-lsp-jsonrpc 1.0.0 pyhd8ed1ab_0 conda-forge
python-lsp-server 1.6.0 hd8ed1ab_0 conda-forge
python-lsp-server-base 1.6.0 pyhd8ed1ab_0 conda-forge
python-slugify 7.0.0 pyhd8ed1ab_0 conda-forge
python_abi 3.10 3_cp310 conda-forge
pytoolconfig 1.2.2 pyhd8ed1ab_0 conda-forge
pytz 2022.6 pyhd8ed1ab_0 conda-forge
pywavelets 1.3.0 py310h9b08ddd_2 conda-forge
pywin32 304 py310h00ffb61_2 conda-forge
pywin32-ctypes 0.2.0 py310h5588dad_1006 conda-forge
pyyaml 6.0 py310h8d17308_5 conda-forge
pyzmq 24.0.1 py310hcd737a0_1 conda-forge
qdarkstyle 3.0.3 pyhd8ed1ab_0 conda-forge
qstylizer 0.2.2 pyhd8ed1ab_0 conda-forge
qt-main 5.15.6 h11209a8_3 conda-forge
qt-webengine 5.15.9 hb9a9bb5_4
qtawesome 1.2.1 pyhd8ed1ab_0 conda-forge
qtconsole 5.4.0 pyhd8ed1ab_0 conda-forge
qtconsole-base 5.4.0 pyha770c72_0 conda-forge
qtpy 2.3.0 pyhd8ed1ab_0 conda-forge
rapidfuzz 2.13.2 py310h00ffb61_0 conda-forge
requests 2.28.1 pyhd8ed1ab_1 conda-forge
rich 12.6.0 pyhd8ed1ab_0 conda-forge
rope 1.5.1 pyhd8ed1ab_0 conda-forge
rtree 1.0.1 py310h1cbd46b_1 conda-forge
scikit-image 0.19.3 py310h1c4a608_2 conda-forge
scipy 1.9.3 py310h578b7cb_2 conda-forge
setuptools 65.5.1 pyhd8ed1ab_0 conda-forge
sip 6.7.5 py310h00ffb61_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
snappy 1.1.9 hfb803bf_2 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sphinx 5.3.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-applehelp 1.0.2 py_0 conda-forge
sphinxcontrib-devhelp 1.0.2 py_0 conda-forge
sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.3 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_2 conda-forge
spyder 5.4.0 py310h5588dad_0 conda-forge
spyder-kernels 2.4.0 win_pyhd8ed1ab_1 conda-forge
sympy 1.11.1 py310h5588dad_2 conda-forge
tbb 2021.7.0 h91493d7_0 conda-forge
text-unidecode 1.3 py_0 conda-forge
textdistance 4.5.0 pyhd8ed1ab_0 conda-forge
thermo 0.2.21 pyhd8ed1ab_0 conda-forge
three-merge 0.1.1 pyh9f0ad1d_0 conda-forge
tifffile 2022.10.10 pyhd8ed1ab_0 conda-forge
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h8ffe710_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tomlkit 0.11.6 pyha770c72_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tornado 6.2 py310h8d17308_1 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
traitlets 5.6.0 pyhd8ed1ab_0 conda-forge
transforms3d 0.4.1 pyhd8ed1ab_0 conda-forge
typing 3.10.0.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.4.0 hd8ed1ab_0 conda-forge
typing_extensions 4.4.0 pyha770c72_0 conda-forge
tzdata 2022g h191b570_0 conda-forge
ucrt 10.0.22621.0 h57928b3_0 conda-forge
ujson 5.5.0 py310h00ffb61_1 conda-forge
unicodedata2 15.0.0 py310h8d17308_0 conda-forge
unidecode 1.3.6 pyhd8ed1ab_0 conda-forge
urllib3 1.26.13 pyhd8ed1ab_0 conda-forge
vc 14.3 h3d8a991_9 conda-forge
vs2015_runtime 14.32.31332 h1d6e394_9 conda-forge
watchdog 2.1.9 py310h5588dad_1 conda-forge
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webencodings 0.5.1 py_1 conda-forge
whatthepatch 1.0.3 pyhd8ed1ab_0 conda-forge
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win_inet_pton 1.1.0 pyhd8ed1ab_6 conda-forge
wrapt 1.14.1 py310h8d17308_1 conda-forge
xorg-libxau 1.0.9 hcd874cb_0 conda-forge
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xz 5.2.6 h8d14728_0 conda-forge
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yapf 0.32.0 pyhd8ed1ab_0 conda-forge
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zipp 3.11.0 pyhd8ed1ab_0 conda-forge
zlib-ng 2.0.6 h8ffe710_0 conda-forge
zstd 1.5.2 h7755175_4 conda-forge
(oscarhx) PS C:\Users\Administrator>The following script still goes run on big network: import numpy as np
import openpnm as op
import matplotlib.pyplot as plt
np.random.seed(100)
ws = op.Workspace()
ws.settings["loglevel"] = 40
np.set_printoptions(precision=5)
#shape = [1, 50, 20] runs correctly
shape = [1, 50, 200]
spacing = 1e-5
net = op.network.Cubic(shape=shape, spacing=spacing)
net.add_model_collection(op.models.collections.geometry.circles_and_rectangles)
net.regenerate_models()
air = op.phase.Phase(network=net)
# air['pore.viscosity']=1.0
air['pore.diffusivity'] = 1e-09
f = op.models.misc.polynomial
air.add_model(propname='pore.viscosity',
model=f,
prop='pore.temperature',
a=[0.00000182082, 6.51815e-08, -3.48553e-11, 1.11409e-14])
# air.regenerate_models()
air.add_model_collection(op.models.collections.physics.basic)
air.regenerate_models()
fd = op.algorithms.FickianDiffusion(network=net, phase=air)
inlet = net.pores('front')
outlet = net.pores('back')
C_in = 1.0
C_out = 0.0
fd.set_value_BC(pores=inlet, values=C_in)
fd.set_value_BC(pores=outlet, values=C_out)
fd.run()
c = fd['pore.concentration']
r = fd.rate(throats=net.Ts, mode='single')
d = net['pore.diameter']
fig, ax = plt.subplots(figsize=[15, 15])
op.visualization.plot_coordinates(network=net, color_by=c, size_by=d, markersize=4000, ax=ax)
op.visualization.plot_connections(network=net, color_by=r, linewidth=3, ax=ax)
_ = plt.axis('off')
plt.show()
rate_inlet = fd.rate(pores=inlet)[0]
print(f'Mass flow rate from inlet: {rate_inlet:.5e} mol/s')
A = (shape[0] * shape[1])*(spacing**2)
L = shape[2]*spacing
D_eff = rate_inlet * L / (A * (C_in - C_out))
print("{0:.6E}".format(D_eff))
----------------------------------------------------------------------------------------
runfile('D:/pyscript/2.py', wdir='D:/pyscript')
[17:14:02] WARNING throat.entry_pressure was not run since the _models.py:480
following property is missing:
'throat.surface_tension'
Traceback (most recent call last):
File "D:\Anaconda3\envs\oscarhx\lib\site-packages\spyder_kernels\py3compat.py", line 356, in compat_exec
exec(code, globals, locals)
File "d:\pyscript\2.py", line 41, in <module>
fd.run()
File "D:\Anaconda3\envs\oscarhx\lib\site-packages\openpnm\algorithms\_transport.py", line 207, in run
self._run_special(solver=solver, x0=x0, verbose=verbose)
File "D:\Anaconda3\envs\oscarhx\lib\site-packages\openpnm\algorithms\_reactive_transport.py", line 203, in _run_special
super()._run_special(solver=solver, x0=xold, w=w)
File "D:\Anaconda3\envs\oscarhx\lib\site-packages\openpnm\algorithms\_transport.py", line 213, in _run_special
x_new, exit_code = solver.solve(A=self.A, b=self.b, x0=x0)
File "D:\Anaconda3\envs\oscarhx\lib\site-packages\openpnm\solvers\_pardiso.py", line 15, in solve
return (spsolve(A, b), 0)
File "D:\Anaconda3\envs\oscarhx\lib\site-packages\pypardiso\scipy_aliases.py", line 48, in spsolve
x = solver.solve(A, b)
File "D:\Anaconda3\envs\oscarhx\lib\site-packages\pypardiso\pardiso_wrapper.py", line 179, in solve
x = self._call_pardiso(A, b)
File "D:\Anaconda3\envs\oscarhx\lib\site-packages\pypardiso\pardiso_wrapper.py", line 268, in _call_pardiso
self._mkl_pardiso(self.pt.ctypes.data_as(ctypes.POINTER(self._pt_type[0])), # pt
OSError: exception: access violation writing 0x0000000000000004 |
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Can you try to downgrade and check if this changes anything? I'll have to check why an older version of |
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Hello professors, Thanks for your help, |
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Thanks for the input @haasad! I am actually having the same problem which I hadn't investigated yet. |
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Hi @jgostick, please let me know if you still experience the issue in a new/updated environment. As of 3 days ago mkl and intel-openmp |
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Hello Professors,
Error in the titile as the source code goes to
is reported sometimes (it goes well occasionally) when calling Pardiso solver on big networks. However, the error doesn't shown for small network.
I use anaconda on windows.
If there is liberary incompatibility, how to solve it.
Best,
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