How to apply user's own 3D images to porespy, rather than images generated?

[eromanga233]

In tutorials, images used are totally generated from the generator module. While in true scientific study, researchers tend to use their own images. How can I apply my own images to porespy?

[jgostick]

No problem:

import imageio

im = imageio.volread(<your filename>)

If you don't have imageio installed, do pip install imageio at the conda prompt.

Your file can be in multiple formats, I like tif since it's common and recognizable as an image. You also need to ensure your image is in binary format, ie 1's and 0's. You can do this in python after you've used imageio to load it, or preprocess it in something like imagej.

I'll make a note to create a tutorial on this.