pinning polars-lts-cpu to the original version as polars pin. This is used in the drug generation as well, so we need to keep it this ver

Author: jjacobson95

build/broad_sanger/05b_separate_datasets.py

@@ -6,6 +6,11 @@
 
 def main():
 
+    print("ls:\n")
+    files = os.listdir(".")
+    print(files)
+    print("\n")
+    
     datasets_to_process = ["CCLE", "CTRPv2", "PRISM", "GDSCv1", "GDSCv2", "FIMM", "gCSI", "NCI60"]
     omics_datatypes = ["transcriptomics","proteomics", "copy_number","mutations"] # csv 
     samples_datatypes = ["samples"] #csv
@@ -37,7 +42,7 @@ def main():
         exp_improve_drug_ids = exp["improve_drug_id"].unique().to_list()
 
         #Ensure that the improve_sample_id column is in integer form.
-        exp = exp.with_columns(pl.col("improve_sample_id").cast(pl.Float64).cast(pl.Int64))
+        exp = exp.with_column(pl.col("improve_sample_id").cast(pl.Float64).cast(pl.Int64))
 
         # Write Filtered Experiments File to TSV. Then delete it from memory.
         exp_filename_out = f"/tmp/{dataset}_experiments.tsv".lower()

build/broad_sanger/exp_requirements.txt

@@ -7,4 +7,4 @@ scikit-learn
 scipy
 requests
 openpyxl
-polars-lts-cpu
+polars-lts-cpu==0.19.17

build/broad_sanger/requirements.txt

@@ -7,7 +7,7 @@ scikit-learn
 scipy
 requests
 openpyxl
-polars-lts-cpu
+polars-lts-cpu==0.19.17
 mordredcommunity
 rdkit
 coderdata==0.1.40