adding proteomics to build_dataset.py

alexandriai168 · alexandriai168 · commit 92d17f8fc831 · 2025-08-25T13:35:34.000-07:00
diff --git a/coderbuild/build_dataset.py b/coderbuild/build_dataset.py
@@ -133,7 +133,7 @@ def process_omics(executor, dataset, should_continue):
         'bladder': ['copy_number', 'mutations', 'transcriptomics'],
         'colorectal':['copy_number', 'mutations', 'transcriptomics'],
         'novartis':['copy_number', 'mutations', 'transcriptomics'],
-        'liver':['copy_number', 'mutations', 'transcriptomics']
+        'liver':['copy_number', 'mutations', 'transcriptomics','proteomics']
     }
 
     expected_omics = dataset_omics_files.get(dataset, [])

Original file line number	Diff line number	Diff line change
`@@ -133,7 +133,7 @@ def process_omics(executor, dataset, should_continue):`
`133`	`133`	`'bladder': ['copy_number', 'mutations', 'transcriptomics'],`
`134`	`134`	`'colorectal':['copy_number', 'mutations', 'transcriptomics'],`
`135`	`135`	`'novartis':['copy_number', 'mutations', 'transcriptomics'],`
`136`		`- 'liver':['copy_number', 'mutations', 'transcriptomics']`
	`136`	`+ 'liver':['copy_number', 'mutations', 'transcriptomics','proteomics']`
`137`	`137`	`}`
`138`	`138`
`139`	`139`	`expected_omics = dataset_omics_files.get(dataset, [])`