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README.md

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@@ -76,7 +76,7 @@ The files above correspond to a specific ptm type (e.g., LYS acetylation). Multi
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## Outputs:
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`ProteoMeter` generates `pandas` DataFrame objects. In our demonstration, we have saved these outputs to CSV files, each of which corresponds to a data frame generated by the `ProteoMeter` `lip_analysis` or `ptm_analysis` functions.
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* lip_processed_pept.csv: LiP double-digested (ProK + Trypsin) peptide-level data. This includes fold-changes for all peptides, tryptic or otherwise (tryptic peptides are indicated by the pept_type column.)
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* lip_processed_prot.csv: Global abundance information used for abundance correction of peptide changes. This includes abundance quantification, fold-changes and statistical signficance.
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* lip_processed_site.csv: Digestion cut site quantification, fold-changes and statistical signficance.
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* ptm_processed_site.csv: PTM site quantification, fold-changes and statistical signficance.
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* lip_processed_prot.csv: Global abundance information used for abundance correction of peptide changes. This includes abundance quantification, fold-changes and statistical significance.
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* lip_processed_site.csv: Digestion cut site quantification, fold-changes and statistical significance.
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* ptm_processed_site.csv: PTM site quantification, fold-changes and statistical significance.
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* ptm_processed_prot.csv: Global abundance information used for abundance correction of PTM changes. This includes abundance quantification, fold-changes and statistical significance.

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