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Description
I am running the following command:
mat.matrices <- kinaseSubstrateScore(substrate.list = PhosphoSite.human,
mat = mat.std, seqs = mat.seq,
numMotif = 5, numSub = 1, verbose = FALSE)
and getting the message:
Error in phosScoringMatrices$combinedScoreMatrix[sites, ] :
subscript out of bounds
I tried running the function directly and at this command
motifScoreMatrix = scorePhosphositesMotifs(mat, motif.mouse.list.filtered,
seqs, verbose)
got the error message
could not find function "scorePhosphositesMotifs"
Also the code mentions “motif.mouse.list”. I am using human data, does his matter?
Thanks in advance for your assistance!
John
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